ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GTGTTCCGGCAGAGGAATTATTGTTACAGGGCCAGCGCCTGCTGGATCTGGCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcatactctatgtccttaacctgatatgattaagagtttaagacatgcatattctgtgcatggagaatgatttattagaataggcgaatagcta...

Basic information

species	Zea mays
transcript	GRMZM2G050325_T02
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G050325_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g16146.1 (Oryza sativa), 5'ss of exon 4

GTGTTCCGGCAGAGGAATTATTGTTACAGGGCCAGCGCCTGCTGGATCTGGCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcatactctatgtccttaacctgatatgattaagagtttaagacatgcatattctgtgcatggagaatgatttatt---agaataggcgaatagcta
 |||   || |||||| |||||||||| || ||||| |||||||||||||  || ||||||||  | || || ||||||||||||||||| |||||||||||      || || |    ||   | |  |  |  ||| |     ||     || | ||  ||  |    |     |||| |   |||||| |   |||    
ATGTGATGGTAGAGGAGTTATTGTTACGGGACCAGCACCTGCTGGATCTGATTATGACTTCTTTTCACGATTCTTCTGCCCAAAATTTGGGATAGATGAGgtatgccgattctttccacccaacaaccaagttttttatgcagacaatgtg-gcttgttaagttaaaaatggccattttagttccagaatatgtagatata--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|50336611|gb|CO531737.1|CO531737

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|18171147|gb|BM340987.1|BM340987

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|71317982|gb|DR795750.1|DR795750

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|50338931|gb|CO534057.1|CO534057

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|74239407|gb|DT647321.1|DT647321

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|94477663|gb|EB706621.1|EB706621

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|71775486|gb|DR973364.1|DR973364

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|60356851|gb|DN223824.1|DN223824

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|50331530|gb|CO526656.1|CO526656

EST:     GCTACGACTTCTTCACGCGNNNNNNNNGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|148986829|gb|EE030628.2|EE030628

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTACCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|37375249|gb|CF624050.1|CF624050

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|37384216|gb|CF629166.1|CF629166

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|211213647|gb|FL457806.1|FL457806

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|37376720|gb|CF624915.1|CF624915

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|9254288|gb|BE344756.1|BE344756

EST:     CTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: CTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|149097405|gb|EE183258.2|EE183258

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGNCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|50331531|gb|CO526657.1|CO526657

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|93015163|gb|EB640683.1|EB640683

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|33099705|gb|CF059665.1|CF059665

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|44901068|gb|CK827613.1|CK827613

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|78119655|gb|DV538039.1|DV538039

EST:     GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

EST: gi|113701518|gb|EE679022.1|EE679022

EST:     GCTACGACTTCTTCACGCGNNNNNNNNGCCCAAAATTTGGAATAGATGAG                         GATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG
genomic: GCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 55

GTGTTCCGGCAGAGGAATTATTGTTACAGGGCCAGCGCCTGCTGGATCTGGCTACGACTTCTTCACGCGTTTTTTCTGCCCAAAATTTGGAATAGATGAGgtgatgtcat ... gttttgacagGATCCCGTTTGTGGCAGTGCACATTGTGTTTTAGCACCTTACTGGGGTGGGAAGCTGGGGAAACACAAACTGATAGCGTTTCAA

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 261

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 524