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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTACCCAGAATGAAGACTATCTGATAGACACAATAGCACTGCACGATGTGATGGGCATTCTACGACCAGTGTTTGCCAATTCTTCTATCTGTAAGgtaacacatctttgtaactgctgccagtggtaagctgtttattttcattttcgatgctgactgcaaattttaagctctattacagtacaagaaaagatag...

Basic information

species Zea mays
transcript GRMZM2G048819_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048819_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g32890.1 (Oryza sativa), 5'ss of exon 3
ATCTCTACCCAGAATGAAGACTATCTGATAGACACAATAGCACTGCACGATGTGATGGGCATTCTACGACCAGTGTTTGCCAATTCTTCTATCTGTAAGgtaacacatct-ttgtaactgctgccagtggtaagctgtttattttcattttcgatgctgactgcaa--attttaagctctattaca-gtacaagaaaagatag
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ATCTCTACCCAGAAGGCAGATTATTTAATAGACACAATAGCGCTGCATGACGTGATGAGCATTCTACGACCAGTTTTTGCCAATCCTTCAATCTGTAAGgttgtgcatctcttatatctgatatcactgg-aaaccattagttttcattttcagttctgcttaaagtgattttgccacttaccatttgtatttttgaatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075397|gb|DV503831.1|DV503831
EST:     ATGTGATGGGCATTCTACGACCAGTGTTTGCCAATTCTTCTATCTGTAAG                         ATCTTCCATGGAGCTGACAATGATATTCTTTGGCTTCAAAGGGATTTTCAT
genomic: ATGTGATGGGCATTCTACGACCAGTGTTTGCCAATTCTTCTATCTGTAAGgtaacacatc ... tatgctgtagATCTTCCATGGAGCTGACAATGATATTCTTTGGCTTCAAAGGGATTTTCAT