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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTTTCTATGGCACCTCCTAAAGCCCTTGAGAGTATTGGAAAAACGTTGCATTCACAGTATGAGCGCTGGCAACCTAAGgtgaggaacttcatttcctgtttaacctcaatcttattggtgaggattatttgcatcttcatatcctcctaacaccacttgcag

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 5'ss of exon 2
ATCCTTTTTCTATGGCACCTCCTAAAGCCCTTGAGAGTATTGGAAAAACGTTGCATTCACAGTATGAGCGCTGGCAACCTAAGgtgaggaacttcatttcctgtttaacctcaatcttattggtgaggattatttgcatcttcatatcctcctaacaccacttgcag
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ATCCATTTTCTATGGCACCTCCAAAAGCCCTTGAAACTATTGGGAAAACATTACACTCACAATATGAGCGCTGGCAGCCAAAGgtgaggcacttcttttgctgtttatagactttattat-gatgac-attacttacatcatg------cccgaatgatgcttgcag

upper sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 5'ss of exon 3
ATCCTTTTTCTATGGCACCTCCTAAAGCCCTTGAGAGTATTGGAAAAACGTTGCATTCACAGTATGAGCGCTGGCAACCTAAGgtgaggaacttcatttcctgtttaacctcaatcttattggtgaggattatttgcatcttcatatcctcctaacaccacttgcag
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ATCCATTTTCTATGGCACCTCCAAAAGCCCTTGAAACTATTGGGAAAACATTACACTCACAATATGAGCGCTGGCAGCCAAAGgtgaggcacttcttttgctgtttatagactttattat-gatgac-attacttacgtcatg------cccgaatgatgcttgcag