1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GAAAGATGCTGGCTCTTATCTGGGCTCCCCTGTGTACCAAGTGAACTCAATGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaacattatcacagtgtgcaatttaatccacattgcttggtcacaactaagcactgattgcatttctctggtgcttggtcgctgcatttaagttttctacttctatgtgcttgcag
species | Zea mays |
transcript | GRMZM2G047894_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGA-TTGCAGAAACEST: gi|211199436|gb|FL401716.1|FL401716
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAAC
EST: GAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGNAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACEST: gi|211223965|gb|FL409228.1|FL409228
genomic: GAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGG-AAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTAC
EST: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATGG-AGAAACTACTEST: gi|211348875|gb|FL413241.1|FL413241
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTCGACTCCACAGGAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAANTGCAGAAACTACTEST: gi|78086850|gb|DV515243.1|DV515243
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACTEST: gi|211285032|gb|FK988594.1|FK988594
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
EST: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAA AGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
genomic: TGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaac ... gtgcttgcagAGAAGGGATGAGGCATACTTCATGTCTCTCCTGAGAATTGCAGAAACTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGATGCTGGCTCTTATCTGGGCTCCCCTGTGTACCAAGTGAACTCAATGAAATTCTTATGCTGCAACGAGGCTATCAAGCACTTGACTCCACAGGAAgtaagtaaacattatcacagtgtgcaatttaatccacattgcttggtcacaactaagcactgattgcatttctctggtgcttggtcgctgcatttaagttttctacttctatgtgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC