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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGATATTAAGGGGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttgcttccattttaatctgtctaccatcatggttactttatagtttctttttgttcaatagattatatcatgatactttatgttatctgttgt...

Basic information

species Zea mays
transcript GRMZM2G047564_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047564_T03 (Zea mays), 5'ss of exon 3
lower sequence: AT4G13360.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATGGATATTAAGGGGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttgcttccattttaatctgtctaccatcatg-gttactttatagtttctttttgttcaata-gattatatcatga--tactttatgttatctgttgt
||||||||||||| || ||||| |  ||||| ||||| |||||||| ||||| |||||||||||||  ||| |    |  ||| |  | |||| | | |||   | |  ||||   ||  ||     |   || ||||| ||  ||   || |||     |  ||    
GGATGGATATTAAAGGAGTTGCTGCAGAAATCCAAAAGGACAAAAACACACCTCTTGTGCAAAAGg--tttataaaataaattatgctttgtcaaacttcaaaagatgatttagcattatttcaaacttgttaagattaaatggtgtactaatttgatgaacatgca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78084643|gb|DV513036.1|DV513036
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|37423415|gb|CF649435.1|CF649435
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|101384149|gb|EB814119.1|EB814119
EST:     GGGTTGCCGTGGATATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|78083153|gb|DV511546.1|DV511546
EST:     GGGTTGCCGTGGAAATACAAAAAGACAAAAAA-CACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|76280674|gb|DV020242.1|DV020242
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|91873504|gb|EB403461.1|EB403461
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|78078185|gb|DV506600.1|DV506600
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|89249262|gb|DY621048.1|DY621048
EST:     GGGTTGCCGTGGAAATACAAAAAGACAAAACAACACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTTATGCAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGT-ATGCAAA
EST: gi|148940990|gb|EC885841.2|EC885841
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|91052341|gb|EB162759.1|EB162759
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|101390505|gb|EB817187.1|EB817187
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|50330060|gb|CO525186.1|CO525186
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|91878455|gb|EB408412.1|EB408412
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|148940383|gb|EC885176.2|EC885176
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|149097995|gb|EE183940.2|EE183940
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|88757308|gb|DY541449.1|DY541449
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|71331741|gb|DR802727.1|DR802727
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
EST: gi|78091724|gb|DV520098.1|DV520098
EST:     GGGTTGCCGTGGAAATACAAAAAGACNNNNNNNCACCACTTGTGCAAAAG                         GTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA
genomic: GGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAGgtctttgttg ... tgcttttcagGTATTCACAGTAGAGTACTCTTTAATTTGTAAGATACATGAGTATGCAAAA