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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaattattgcaatgaattctctgttgttgatgtgatgattaaatggggtacaagtttcagaactcagaactaactaataataaactttttgcag

Basic information

species Zea mays
transcript GRMZM2G047093_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047093_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g43030.2 (Oryza sativa), 5'ss of exon 3
AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaattattgcaatgaattctctgttgttgatgtgatgattaaatggggtacaagtttcagaactcagaactaactaataataaactttttgcag
||||  ||||||||||||||||||||||||| |||||||| || ||||||||||| || || |||||||| || ||  ||||||| ||  || | ||  | |  ||     |   |  | |  ||  |||||     |   ||   |||| |  ||||| | |  | |     | | |||||
AAACCTTATCAATGAAAGGTTTGACGCTAAATTGCATGGATCGGAAATCTGAAGCATATGAACTTGTTCGCCGTGGATTGAAGgt-atgtatgagtgatacggttt-----tgagtatttttttgtctaaatcttacaattgtacgagaaat-ggaactgatt--ttacttgatatatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146407|gb|FL424906.1|FL424906
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211081604|gb|FL369109.1|FL369109
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|18384963|gb|BM418162.1|BM418162
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGNTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211506963|gb|FL409463.1|FL409463
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211005424|gb|FL371737.1|FL371737
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211307138|gb|FL392844.1|FL392844
EST:     GCATGGACCGAAAATCTGAAGCGAACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211245310|gb|FL400476.1|FL400476
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATATGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|18383999|gb|BM417199.1|BM417199
EST:     CATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCG
genomic: CATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGG-CCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCG
EST: gi|211087316|gb|FL378414.1|FL378414
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTAACGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211351636|gb|FL428918.1|FL428918
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211202659|gb|FL427925.1|FL427925
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211298871|gb|FL392442.1|FL392442
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211434149|gb|FL401078.1|FL401078
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211351633|gb|FL428915.1|FL428915
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211210031|gb|FL411368.1|FL411368
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAG
EST: gi|211144252|gb|FL374571.1|FL374571
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|18654934|gb|BM499739.1|BM499739
EST:     TCTGAAGCGT-CGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: TCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|76013182|gb|DT940352.1|DT940352
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|18963330|gb|BM660374.1|BM660374
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|32933101|gb|CF037913.1|CF037913
EST:     TACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: TACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211039363|gb|FL382061.1|FL382061
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211065683|gb|FL394004.1|FL394004
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211204324|gb|FL385639.1|FL385639
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211156640|gb|FL401280.1|FL401280
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211166060|gb|FL381601.1|FL381601
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211303363|gb|FL404498.1|FL404498
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGNATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211517987|gb|FL372292.1|FL372292
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211112730|gb|FL370881.1|FL370881
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211461654|gb|FL410743.1|FL410743
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211506957|gb|FL409457.1|FL409457
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|32943122|gb|CF047941.1|CF047941
EST:     ACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: ACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211339025|gb|FL403590.1|FL403590
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|19855106|gb|BQ060158.1|BQ060158
EST:     CATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACG-GGCCTGAAG                         AATGATCTGAAGAGTCATGTGCTGTGTGGCATGTTTATGGTTTGCTTTATC
genomic: CATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGT-CTGT-TGGCATGTTTATGGTTTGCTTTATC
EST: gi|211184480|gb|FL377621.1|FL377621
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211095044|gb|FL395908.1|FL395908
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211298413|gb|FL370612.1|FL370612
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211324007|gb|FL416239.1|FL416239
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211037251|gb|FL404714.1|FL404714
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211493470|gb|FL389418.1|FL389418
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATAGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211223503|gb|FL389609.1|FL389609
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|33095320|gb|CF055314.1|CF055314
EST:     ACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGCTTATGGTNTGCTTTATCGG
genomic: ACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211040054|gb|FL419095.1|FL419095
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211063544|gb|FL410481.1|FL410481
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211002643|gb|FL371723.1|FL371723
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211366005|gb|FL393803.1|FL393803
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211169425|gb|FL381638.1|FL381638
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
EST: gi|211194169|gb|FL382173.1|FL382173
EST:     GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAG                         AATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG
genomic: GCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 228

AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGGTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 287

AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGGTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 247

AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGGTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 285

AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaatt ... ctttttgcagAATGATCTGAAGAGTCATGTCTGTTGGCATGTTTATGGTTTGCTTTATCGGTCAGATAGAGAATACAGAGAAGCTATAAAATGTTACAGAAATGCATTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACACTATCAATGAAAGGTTTGACGCTAAACTGCATGGACCGAAAATCTGAAGCGTACGAGCTTGTTCGACGAGGCCTGAAGgttatcaattattgcaatgaattctctgttgttgatgtgatgattaaatggggtacaagtttcagaactcagaactaactaataataaactttttgcag

- - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG