Sequence
atgc intronic sequence ATGC exonic sequenceCATCGTTGGGCGCCCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtaccccatcgagcacggaatcgtcagcaactgggacgacatggagaagatctggcatcacaccttctacaacgagctccgtgtggctcccgagg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G047055_T04 (Zea mays), 5'ss of exon 3
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 3
---------CATCGTTGGGCGC----CCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATGCCTACGTCGGCGA-CGAGGCGCAGT--CCAAGAGGGGTATCCTGACCctcaagtaccccatcgagcacggaatcgtcagcaactgggacgacatggagaagatctggcatcacaccttctacaacgagctccgtgtggctcccgagg
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TCTGCGCTACCCCATTGAGCACGGTATTGTGACCAACTGGGACGACA-TGGAGAAGATCTGGCACCACACCTTCTTCAACGAGCTGCGCGTGGCGCCCGAGgtgggtatt-tggcacgcacacatgtc-ccggaca-----tcctcgccacctgc-acgcgtcgctgaacttcccttgccgcccctcgcgc--ctgcctctgcag-----------
upper sequence: GRMZM2G047055_T04 (Zea mays), 5'ss of exon 3
lower sequence: EDO98923 (Chlamydomonas reinhardtii), 5'ss of exon 2
-----CATCGTTGGGCGCCCGCGCCACAC-CGGTGTGATGGTGGGGATGGGGCAGAAGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtaccccatcgagcacggaatcgtcagcaactgggacg-acatggagaagatctggc--atcacaccttctacaacgagctccgtgtggctcccgagg
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GCTGGCTTTGCTGG-TGATGATGCCCCTCGCGCTGTGTTCCCCTCCATCGTG-----GGCCGGCCCCGCCA-CACCGGTGTGATGGTCGGGATGGGCCAGAAGgtgcgctcgcttttcgtttggctcgtgcatgcttgcacgcgttatatgcatgtatgaagccatgttgagcatacttgcttctttggactctgcag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211074261|gb|FL177903.1|FL177903EST: AGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACC CTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGG
genomic: AGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtacc ... ctgtccccatCTACGAGGGATACGCCCTCCCCCACGCCATCCTTCGTCTCGACCTGGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCGTTGGGCGCCCGCGCCACACCGGTGTGATGGTGGGGATGGGGCAGAAGGATGCCTACGTCGGCGACGAGGCGCAGTCCAAGAGGGGTATCCTGACCctcaagtaccccatcgagcacggaatcgtcagcaactgggacgacatggagaagatctggcatcacaccttctacaacgagctccgtgtggctcccgagg
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG