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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttaccatttactagtaaatttacaaatatggttggtgttctgaattctgatattaccgatggatatcaattaaaagcttttagcttcatactta...

Basic information

species Zea mays
transcript GRMZM2G046587_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244615|gb|DT652529.1|DT652529
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|211349013|gb|FL190902.1|FL190902
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|17931649|gb|BM268609.1|BM268609
EST:     ACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: ACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|211351406|gb|FL190903.1|FL190903
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|9732830|gb|BE511582.1|BE511582
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|32851273|gb|CD990954.1|CD990954
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
EST: gi|60354612|gb|DN221585.1|DN221585
EST:     GACCAGGGGCTCCTGAATTCTTCAATTGT                         GTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA
genomic: GACCAGGGGCTCCTGAATTCTTCAATTGTgtaagtttac ... caattgtcagGTGGTTGAGATTCCTAGAGGCAGCAAGGTTAAGTACGAGTTGGACAAGGCA