1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TAAAGAATTTGTCGTCTTGACGGAACTGCTTATGATACAGCTGCTGAAACTCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaactaaaacacttgctgctgctgttttcacacgtgctacttgttcaatgagaatgcattacagctactgaaatatttatgatgtaacgcctcag...
species | Zea mays |
transcript | GRMZM2G046418_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAEST: gi|29544381|gb|CB604761.1|CB604761
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGA
EST: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGAEST: gi|211395003|gb|FL034010.1|FL034010
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTGGAGACCTTGGATAAGCTGAAGGCAAGA
EST: TCGATGGCATAGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAG GTCCGCCGAGTTCAGTCCCTTGTG
genomic: TCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaact ... aacatgtcagGTCCGCCGAGTCCAGTCCCTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGAATTTGTCGTCTTGACGGAACTGCTTATGATACAGCTGCTGAAACTCGATGGCATCGAAGCTGAAGGAGAAGCAAGGGCACAGAGGAAGGCTGAGgtacacaactaaaacacttgctgctgctgttttcacacgtgctacttgttcaatgagaatgcattacagctactgaaatatttatgatgtaacgcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA