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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCTGTTGCAGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttgtacaaatacttcaaactttctgtacatggtgattgtaaactaatggaaaggctatatttttttcctcttattttatccttgtgatatcct...

Basic information

species Zea mays
transcript GRMZM2G046098_T05
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g64780.2 (Oryza sativa), 5'ss of exon 3
TTCCCTGTTGCAGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttgta--caaatacttcaaactttctgtacatggtgattgtaaactaatggaaaggctatatttttttcctcttattttatccttgtgatatcct
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||| ||||||||||||||  | ||   ||| |    |  || || | ||| | |   ||   || |        |   | || | |     | | |  |  |  | ||| ||   
TTTCCTGTTGCTGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGCTTTTTCAGCCCACTATATGCAAAACTTGGGATCGACATATTTGgtaattgtggttttcaatttagcctcacattttctactttgaacttcctaattttcttcttgcacacatgtgtgaaaacatgtactgacactttgaaatt--

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G15360.2 (Glycine max), 5'ss of exon 3
TTCCCTGTTGCAGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttgtacaaatacttcaaactttctgtacatggtgattgtaaa----ctaatggaaaggctatatttttttcctcttattttatccttgtgatatcct
|| || ||||| || || |||||||| ||||||||||||||||| ||||||||||| || || |||||  ||||  | |  || || ||  |  | |||||| |    | |       ||||||            || | ||| ||      ||  |   |||     | |       | ||||| |     ||| | ||   
TTTCCAGTTGCTGTTACCTTCTTCATTACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGCATAGATGTGTTTGgtgagtaatttgttttgccttcaattaacacagctttgataattatattttccctcctcagaagttacaaatagggattttttattgttctactgt-agat---

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G39490.1 (Glycine max), 5'ss of exon 3
TTCCCTGTTGCAGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttgtacaaatacttcaaactttctgtacatggtgattgtaaactaatgg---aaaggctatatttttttcctcttattttatccttgtg-atatcct
|| || ||||| || || |||||||| ||||||||||||||||| ||||||||||| || || |||||  ||||  | |  || || ||  |  |||||||| |    | ||      ||| ||            || | ||| ||   |        ||| | || |  |      | || |||| | ||  || |||    
TTTCCAGTTGCTGTTACCTTCTTCATTACATGGTGGTTTATTCAGTTTGTTGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGGATAGATGTATTTGgtgagtaatttaatttgcctttaattaacacagctttgataattatattttccctcctcaaaagttacaaatagggattttttttttgttctactgtata----

upper sequence: GRMZM2G046098_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv07s0031g02010.t01 (Vitis vinifera), 5'ss of exon 3
TTCCCTGTTGCAGTCACGTTCTTCATCACATGGTGGTTTATTCAATTTGTTGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttgtacaaat-act-tcaaacttt--ctgtacatggtgattgtaaactaatggaaaggctatatttttttcctcttattttatccttgtgatatcct
|| || |||||||| || || ||  | ||||||||||||||||| || |||||||| || ||||||||  |||||| |   ||||| ||| | ||||||||||        |   ||  || |  | ||||   | ||  | ||  ||   |  ||  |||||||  ||| |   | |  |||  || ||  ||||    |   
TTTCCAGTTGCAGTTACATTTTTTGTTACATGGTGGTTTATTCAGTTCGTTGATGGTTTCTTCAGTCCATTATATGAACGGCTTGGCATCGATATATTTGgtaggttcaaaatgcattgctgttgatctttggttttattttgtctttaggaggtatgggaaaggtgatactaaatgctgctt-cttaatatttgtttagt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51871157|gb|CV126041.1|CV126041
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|51871146|gb|CV126030.1|CV126030
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|211391866|gb|FL013594.1|FL013594
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|50336995|gb|CO532121.1|CO532121
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|91053372|gb|EB163790.1|EB163790
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|50323815|gb|CO518941.1|CO518941
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|88755429|gb|DY539570.1|DY539570
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|42491828|gb|CK700874.1|CK700874
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|74239462|gb|DT647376.1|DT647376
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|60398318|gb|DN231134.1|DN231134
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTTTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|28910665|gb|CB331552.1|CB331552
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|76293651|gb|DV033219.1|DV033219
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|42491878|gb|CK700924.1|CK700924
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|148944675|gb|EC889811.2|EC889811
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|40287192|gb|CK327584.1|CK327584
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAANTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
EST: gi|148949550|gb|EC895017.2|EC895017
EST:     TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTG                         GTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG
genomic: TGATGGGTTTTTCAGTCCCCTATATGCAAAACTTGGAATCAACATATTTGgtaatccttg ... atgattgcagGTCTTGGTTTTTTGACTTCTCTGGTATTCATATTTCTGGTTGGAATATTTG