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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattttgaatgcgctgccagac...

Basic information

species Zea mays
transcript GRMZM2G045371_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 4
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtg---------aggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattttgaatgcgctgccagac
|  |||| |||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| |||||||| ||||| || |||||||||||||||||||          ||||| ||||||| ||       |  |||||| |||| ||     | | |  ||        |  ||  | ||  | | || |||     |      
GCCTGGTGTTCAGGCACAAGCTGTATCAACTGCGGGAGGAGAGGGACATGAAGCCCCAGACCTTCGCCAGCCTCGTCTCCGCTCTCCTCTACGAGAAGAGgtaatgaactaaaggatgttgctagcgcagcgcgagttgaattgagtagtatatgaagcagagttaaatt---caaatgccaattggagtattcaatttcgcg------

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA14G24270.3 (Glycine max), 5'ss of exon 2
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgtta----ttttaaattttgaatgcgctgccagac---
|  | || ||| ||||||| ||||| |||||||| || |||||||| ||||| || ||||||||||||||  | |||||||| || ||||| ||||| |||| |      ||| | |  | | |  ||  |       |   |||||| |     |     | ||| |||||     |||||| ||||    |   |   | |    
GTCTTGTTTTCCGGCACAAACTGTACCAGCTGCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGTTTAGTCTCTGCTCTGCTCTATGAGAAAAGgtaa------tgcaatttagatataaggaaagaaaaaaactgttctggatttcttttgaaggagtatttgttggaagttttaattttttggcg-attttaaaatggg

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 1
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattttgaatgcgctgccagac-------
|  |  | ||| | |||||  |||||||||| ||||| |||||||||||||||||  | |||||||||||||| ||||| ||  | ||||||||||| ||||    | |    |  ||           | | | |    |||    |  |  | || | |   |  || | | | ||||   ||||| |  |      |       
GCCTCCTTTTCCGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACCTTTGCCAGCCTAGTCTCCGCTATTCTCTACGAGAAAAGgtatccaatcaaattctgtttcggattatgcacttttatagatagatgacatgcataattctatt--ttatcactctaaaaactgaatacattcttttgcatttcag

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA06G11930.1 (Glycine max), 5'ss of exon 1
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattt---taaattttgaatgcgctgccagac-------
|  |  | ||| | |||||  |||||||||| ||||| |||||||||||||||||  | || ||||||||||| ||||| ||  | ||||||||||| ||||    ||       ||      || ||  |||| |||  |||| |    |         |   |   | |||| |   ||||     | | | |||     |       
GCCTCCTTTTCGGCCACAAATTGTATCAGCTCCGCGAAGAGAGGGACATGAAGCCCCAAACTTTTGCCAGCCTCGTCTCCGCTATTCTCTACGAGAATAGgtatcaatcaattgtgtttcggattaggctaattatgtttgattttatagatgatatgcacaattctattttatgtatgtaaaaacaaattacactgttttgcctttcag

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G10130.1 (Glycine max), 5'ss of exon 2
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaaccta---ctgcgggtagttgttattttaaattttgaatg-cgctgccagac-
|  | || ||| ||||||| ||||||||||| || || |||||||| ||||| || ||||||||||||||| | |||||||| || || || ||||| |||| | |   ||     |     |  ||   ||   ||||  |||    | ||   |     |   |||  || | |   |   |||||  |  ||  | |  |  
GTCTTGTTTTCCGGCACAAACTGTATCAGCTTCGTGAAGAGAGGGATATGAAACCAGAGACCTTTGCCAGCTTAGTCTCTGCTCTGCTTTATGAGAAAAGgtaatgcagtt-----tagatctgaggaaaaaaaatgtaatatttgttgaaagttttaattttttggtgattttgaaagtgggttttgcttatcgaagtcgtatg

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 3
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattt--tgaatgcgctgccagac
|| | || ||  ||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||||||| ||||| || || || ||||| |||| |     ||  || ||   |||| |   |      |    |||||  |  |  |       | | || ||||   | ||||  ||  |   ||    |  
GGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgttactcgcttattactgaagtttttgtttatcatattttttttctgtttggaattttgaaatggacttattatgcaacatttgctggtttttctttttg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396523|gb|DN229392.1|DN229392
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|18654592|gb|BM499397.1|BM499397
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5268391|gb|AI770355.1|AI770355
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|37376121|gb|CF624562.1|CF624562
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTATACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGATGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|71759295|gb|DR957232.1|DR957232
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTTTACGAGAAGAG                         ATTTGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320125|gb|FL100656.1|FL100656
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320131|gb|FL100662.1|FL100662
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|76018879|gb|DT946049.1|DT946049
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5901279|gb|AW042379.1|AW042379
EST:     AAGCCTGAGACCTTTGCCAGCCTTGGCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320126|gb|FL100657.1|FL100657
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|89251732|gb|DY623518.1|DY623518
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|8273042|gb|BE012139.1|BE012139
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32908095|gb|CF012908.1|CF012908
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|15214985|gb|BI431121.1|BI431121
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32802701|gb|CD954937.1|CD954937
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32914687|gb|CF019499.1|CF019499
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTAGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|78106724|gb|DV525142.1|DV525142
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|76923710|gb|DV169620.1|DV169620
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|113702572|gb|EE680076.1|EE680076
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|19351573|gb|BM896105.1|BM896105
EST:     CTCTGCGCTCCTCTACGAGAAGAG                         ATTGGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: CTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320129|gb|FL100660.1|FL100660
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320128|gb|FL100659.1|FL100659
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32913371|gb|CF018183.1|CF018183
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|8577257|gb|BE129894.1|BE129894
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|60398455|gb|DN231271.1|DN231271
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5847438|gb|AW000517.1|AW000517
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|19351598|gb|BM896130.1|BM896130
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|14244825|gb|BG842763.2|BG842763
EST:     TTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: TTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32858096|gb|CD997777.1|CD997777
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|71438351|gb|DR819401.1|DR819401
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5901232|gb|AW042332.1|AW042332
EST:     CTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGGCATTGCTGGACTTGGAGATGACAA
genomic: CTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|30088393|gb|CB886598.1|CB886598
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|60355770|gb|DN222743.1|DN222743
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320127|gb|FL100658.1|FL100658
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5819196|gb|AI987402.1|AI987402
EST:     CTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGNCAA
genomic: CTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|76284605|gb|DV024173.1|DV024173
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|14243549|gb|BG841232.2|BG841232
EST:     GACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: GACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32802966|gb|CD955202.1|CD955202
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|5895676|gb|AW036922.1|AW036922
EST:     AAGCCTGAGACCTTTGCCAGTCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|78091664|gb|DV520038.1|DV520038
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|50337097|gb|CO532223.1|CO532223
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|37390704|gb|CF632585.1|CF632585
EST:     TGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: TGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211320444|gb|FL345949.1|FL345949
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGSTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|18654593|gb|BM499398.1|BM499398
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|60395156|gb|DN228025.1|DN228025
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32805139|gb|CD957375.1|CD957375
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|78086605|gb|DV514998.1|DV514998
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|89760015|gb|DY688633.1|DY688633
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|76923708|gb|DV169619.1|DV169619
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|78106723|gb|DV525141.1|DV525141
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|40334026|gb|CK368096.1|CK368096
EST:     GCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: GCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|31361651|gb|CD446008.1|CD446008
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|32789254|gb|CD941490.1|CD941490
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|71774247|gb|DR972125.1|DR972125
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|60352145|gb|DN219118.1|DN219118
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|116827042|gb|EC870897.1|EC870897
EST:     AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
EST: gi|211275645|gb|FL309928.1|FL309928
EST:     AAGCCCGAGACATTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 288

GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 343

GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 359

GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 304

GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattt ... aaactttcagATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGGTCTTCAGGCACAAGCTGTATCAGCTGCGCGAGGAGAGGGACATGAAGCCTGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgaggattttgctagtgcgcttttgggggaattgtgtaggattctgggtaaacctactgcgggtagttgttattttaaattttgaatgcgctgccagac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC