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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaagaactcaccaattgaaacattttgttcttccaagaatgtgtgtacccaatcgtctatgcatgatgttacaggctcaatttcagcaatagc...

Basic information

species Zea mays
transcript GRMZM2G045241_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 5'ss of exon 3
GTACAAATTGATACGGAAGATAGGTGATGGAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaagaactcaccaattgaaacattttgttcttccaagaat---gtgtgtacccaatcgtctatgcatgatgttacaggctcaatttcagcaatagc-
||||||| ||||| || ||||||| ||||| ||||||||||||||||||| ||||| |||    ||||| ||||||||||||||||||    |||      |   |||| | |||  |   |   |    |||  |  || | | ||     |  |  ||    || |  |  |  |  | | 
GTACAAAGTGATAAGGGAGATAGGCGATGGCACCTGTGGGAATGTTTTTAGGGCTTATAACACTGAAACAAATGAAATTgtaagtgcag---ctcttggcatagtacatatggttacttggatcttttcatgttaattcagttgccttctgctccttatatctactaacctataa-aggaacg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211186023|gb|FL445780.1|FL445780
EST:     GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT                         GTTGCTGTTNNNNNNNTGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
genomic: GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaa ... ctccatccagGTTGCTGTTAAAAAAATGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
EST: gi|76294295|gb|DV033863.1|DV033863
EST:     GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT                         GTTGCTGTTNNNNNNNTGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
genomic: GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaa ... ctccatccagGTTGCTGTTAAAAAAATGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
EST: gi|78117447|gb|DV535834.1|DV535834
EST:     GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT                         GTTGCTGTTNNNNNNNTGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
genomic: GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaa ... ctccatccagGTTGCTGTTAAAAAAATGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
EST: gi|28361796|gb|CB240152.1|CB240152
EST:     GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATT                         GTTGCTGTTNNNNNNNTGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT
genomic: GAACCTGTGGGAATGTTTTTATGGCTTCTAATGTAGAAACTAATGAAATTgtaagtgcaa ... ctccatccagGTTGCTGTTAAAAAAATGAAGAGAAAATTTTGTCATTGGGAAGAATGTATT