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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTATCAAATCAGGGATCTGGATTTGGAGGGCATCCATCCCTGGATCAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttacatgcatcccttgtactaaattcatacttatttaaaataaatgtaatttcagacgtgaatactgaagtgaatgttctatactatctctatcag

Basic information

species Zea mays
transcript GRMZM2G044866_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044866_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os05g45490.1 (Oryza sativa), 5'ss of exon 3
CAAATTTATCAAATCAGGGATCTGGATTTGGAGGGCATCCATCCCTGGATCAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttacatgcatccctt-----gtactaaattcatacttatttaaaataaatgtaatttcagacgtgaatactgaagtgaatgttctatactatctctatcag
||||||| ||||||||||| |||| |||||| ||||||||||| ||||| ||||||||  | |||||  |||||| |||||| |||||||||||||| ||||||||||| ||||||   |      || | ||| || |  |  |   || |  |      | | | ||| || |||||   |||| | | | || | | ||||||
CAAATTTCTCAAATCAGGGCTCTGTATTTGGTGGGCATCCATCTCTGGAGCAGAGAAATAAATCTTTTGACATTAGTGAGTCTATGACTGTCCACTGTGGgtaggttacttgcatcttcttacccatatttaatccagaacttctgccaaaacttaatggctgaaatgtgtatgctgaatgaaatgatttgtgctgttt-tatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211406200|gb|FL194789.1|FL194789
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: gi|211406202|gb|FL194791.1|FL194791
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: gi|211406201|gb|FL194790.1|FL194790
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: gi|211406199|gb|FL194788.1|FL194788
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: gi|211530401|gb|FL405489.1|FL405489
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
EST: gi|211406198|gb|FL194787.1|FL194787
EST:     CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGG                         CTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA
genomic: CAGAGAAACGATTCTTTCAACATTAATGAGTCAATGACTGTCCACTGCGGgtaggttaca ... tctctatcagCTTTGTCAGAGGAAAGAAGCCTGGCCAAGGTACTGGATTCGATATCAAGGA