Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgatttttccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac...

Basic information

species Zea mays
transcript GRMZM2G044851_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g46460.1 (Oryza sativa), 5'ss of exon 3
GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgatttttccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttt--tcac
 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||   |||    |  |  | |  |   ||   | || | | | ||     | |   |    | |        | ||  ||     | |  | |    ||
CGGCACGGTTTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcaccaccacacggcacatccctctctc--tccgcagttctatctgaaaaccacgcgcctttctcggtgcgatcgattgatctcatgtttctagctac

upper sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G49470.1 (Glycine max), 5'ss of exon 4
-GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgattttt--ccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac
  || || || ||| | ||||| ||  | || |||||||| || ||||| ||||||||| | |||| |||||| ||||||||||||| ||| |||||  | |||||| |    |       ||| ||  ||       ||     | |    |  |||||  |  |  ||  || |  |   ||||| |       | ||   
CAGGGACAGTTTACCTCTTCTCTCTTCTTGGAGCCTTCCTTAGTGACTCTTACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagttatccatattgtacatacaaaagctatagctagcatctaattaatgatctaactttggactaataaataatatgtgttgtcggatttatt---

upper sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G49460.1 (Glycine max), 5'ss of exon 2
GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgatttttccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac--------
 || || || ||| | ||||| ||  | || |||||||| || ||||| ||||||||| | |||| |||||| ||||||||||||| ||| |||||  | ||||||     |  | ||   |   |  || | |   ||  |  ||  |||   |    |||   ||  ||   ||   ||| |     | ||||   |         
AGGGACAGTTTACCTCTTCTCTCTTCTTGGAGCCTTCCTTAGTGACTCTTACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATTgtaagtt----atttttattgaagca--aaacaaaaagc--acattcacatatgttaaacaaaaaacacatacacaatatgtttacaggaaagttgataaaattgatt

upper sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0021g00330.t01 (Vitis vinifera), 5'ss of exon 3
GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgc---acacgtctacctacctattaatcgacctgccgatttttccat-cgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttttcac
 || || || ||||| ||||| ||  | || ||||| || |||||||| ||||||||  | ||||||||||| |||||||| |||| |||||||||| | ||||||  |     |     |||  |     ||  |    |  ||||  |  ||    |||| |   |||    | | ||  || ||| |||  |         
TGGAACTGTCTACATTTTCTCTCTTCTGGGTGCCTTTCTTAGCGACTCTTACTGGGGGAGGTACAAGACCTGTGCCATCTTTCAGGTCATCTTTGTCATTgtaagtttctaagtataaagaccatcaaggaaaatgtatcgaggattgatttatatagtctgtcttcctagttct-aacaaagtatgttggattgcag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927974|gb|DV171443.1|DV171443
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|148987145|gb|EE030973.2|EE030973
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|50328864|gb|CO523990.1|CO523990
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGCGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|86474663|gb|DY241033.1|DY241033
EST:     AGTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTACTCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|71417415|gb|DR804042.1|DR804042
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|74245993|gb|DT653907.1|DT653907
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|74237215|gb|DT645129.1|DT645129
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|71424538|gb|DR806351.1|DR806351
EST:     ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
genomic: ACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGAC
EST: gi|74240219|gb|DT648133.1|DT648133
EST:     CTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTTGTCCTC                         GGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGA
genomic: CTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTT-GTCCTCgtaagtcgca ... gctgctgcagGGCCTCGCGCTGCTGTCGGTGTCGTCGCACCTCTACCTAATCAGGCCGGA