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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAGCTAATATCACCTTGCATGTGCAAGGGAACTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccagtgctttcataacatcttccatatcaatttccttcaaggacattatatgtgctgtgtgcttttcaattatattgccaacactaatgccatt...

Basic information

species Zea mays
transcript GRMZM2G044569_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044569_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os08g29590.1 (Oryza sativa), 5'ss of exon 3
GTGATGAGCTAATATCACCTTGCATGTGCAAGGGAACTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacac-ccagtgctttcataacatcttccatatcaatttccttcaaggacattatatgtgctgtgtgcttttcaat-tatattgccaacactaatgccatt-
||||||| || ||||||||||||||||||||||||||||| || ||||||||||| || || |||||||||||| ||||||||||||| | | | | || || |   ||||| || || ||| |||  || |   |  | |||    |      | |   | | |  |||   | |  || |   ||| 
GTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGgtgctctctaatgtttccgctacatcatc-atttca-ttttgttaagaaatctgatagtaacaacacacataaaagtatgaatttttagc-ttattattattc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962587|gb|CN845296.1|CN845296
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|78085525|gb|DV513918.1|DV513918
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|71766873|gb|DR964810.1|DR964810
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|71764260|gb|DR962197.1|DR962197
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|89253176|gb|DY624962.1|DY624962
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACATCTTGCAGAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|71449470|gb|DR830520.1|DR830520
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|78075719|gb|DV504153.1|DV504153
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|78085425|gb|DV513818.1|DV513818
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|74242907|gb|DT650821.1|DT650821
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|91875640|gb|EB405597.1|EB405597
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|149051784|gb|EE155909.2|EE155909
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|76287272|gb|DV026840.1|DV026840
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|211220736|gb|FL455232.1|FL455232
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATYTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|91877670|gb|EB407627.1|EB407627
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|26457371|gb|CA828954.1|CA828954
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|67025393|gb|CO454142.1|CO454142
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
EST: gi|211122360|gb|FL034211.1|FL034211
EST:     CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAG                         GAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT
genomic: CTCAGCAGTTTGTTCACCGTTCTTGTCTTGACCACTGGCGATCTGTTAAGgtacacccag ... gattttgtagGAAGGATTTGCATTTTCACACTGCACAACTTGCAAAGCTCAGTTTCATCTT