1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAACTGTTGCATCTGTTGGTGATTCACGTTGTGTCCTTGAAGCTGAGGGATCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgctttctcatagtgtactgttgctctatcgttggttacatgtttggctcttctgacttgttggttttttatttgtag
species | Zea mays |
transcript | GRMZM2G044382_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGTEST: gi|148971590|gb|EE022306.2|EE022306
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGTEST: gi|148993132|gb|EE033731.2|EE033731
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGTEST: gi|148939724|gb|EC884406.2|EC884406
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGTEST: gi|88747035|gb|DY531176.1|DY531176
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGTEST: gi|89249221|gb|DY621007.1|DY621007
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
EST: TCCATCTACTATTTGTCCGCTGACCATCCCTTCCACGCTAATGAAGAGGA GGGTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATEST: gi|32789398|gb|CD941634.1|CD941634
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAAT
EST: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGA GGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGGCTAAATGTTGT
genomic: TCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgc ... ttatttgtagGGTTGGACGTGTAACCGAATGTGGAGGTGAAGTTGGAAGACTAAATGTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACTGTTGCATCTGTTGGTGATTCACGTTGTGTCCTTGAAGCTGAGGGATCCATCTACTATTTGTCGGCTGACCATCGCTTCGACGCTAATGAAGAGGAgtaagaccgctttctcatagtgtactgttgctctatcgttggttacatgtttggctcttctgacttgttggttttttatttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA