Sequence
atgc intronic sequence ATGC exonic sequenceGTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaatattcatatgtttatattcgctacatatattagctacggttgttcacttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044317_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 3
GTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaatattcat-atgtttatattcgctacatatattagcta------cggttgttcacttgtggttct--------------tttgaccaactcaccagaaagctgtatttgatacg-acacacag-
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AGGAATTGTGGAAAGCCCATATGAGGCACCAGGATCCTACAGAGACTTTGAACAAGGACATAATATCTCACTTTGTTCTCCGTCTTGTCTACTGCAGAACgtaagcttaacattcgttacacttgagtacttgacattccatagacagtaagccggtggtttgcttctggtgctttcaagtttgaacctttgactaacttctca-aaggctttgtgctatacccgcattctag
upper sequence: GRMZM2G044317_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G11130.1 (Glycine max), 5'ss of exon 3
GTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaatattcatatgtttat--attcgctacatatattagctacggttgttcacttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacag
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AGGACCTGTGGAAAATGAATATGAGACATCAAGACGCATCTCAGGTTCTGAACAAGGATATTATATCACATTTTGTTCTACGTCTGGTGTATTGCAGAACgtaagagctcttctctctcttttgtgcattctttttctatgttgttctgtgccattga---aaagaatcctcggttgtttgactaataatggctgatcaaaat---------
upper sequence: GRMZM2G044317_T04 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G28150.1 (Glycine max), 5'ss of exon 3
GTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaatattcatatgtttatattcgctacatatattagctacggttgttcacttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacag
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AGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTACGTCTGGTGTATTGCAGAACgtaagagc--tcttatcttctctctcttttgtgcattctttttttactgttgttcc------atgccattgaaaagaatcctcggttgtttgactaataatgcctgat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18661200|gb|BM501285.1|BM501285EST: CGCACTTTGTGCTCCGTCTAGTCTACTGCAGAAC GGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTA
genomic: CGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaa ... cgacacacagGGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAATTGTGGAAGACACACATGAGGCACCAGGATCCAGCAGAGAATTTGAACAAGGATATAATATCGCACTTTGTGCTCCGTCTAGTCTACTGCAGAACgtaagattaatattcatatgtttatattcgctacatatattagctacggttgttcacttgtggttcttttgaccaactcaccagaaagctgtatttgatacgacacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG