1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgctgcggacgagatcccgtatcatttcgctgcttgttttgcgggatcgggatgttgggccaaatccattttgatggtggccgtgtagatctc...
species | Zea mays |
transcript | GRMZM2G044027_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|149097834|gb|EE183762.2|EE183762
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|6194647|gb|AW146751.1|AW146751
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|6020952|gb|AW065880.1|AW065880
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: CATCGGCTCTCTACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|60672298|gb|DN475062.1|DN475062
genomic: CATCGGCTCGC-ACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|40334152|gb|CK368222.1|CK368222
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTT-CTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|22473192|gb|BU037672.1|BU037672
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAACAGATAACCTGAAGAAGEST: gi|26558105|gb|CA830340.1|CA830340
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|148945878|gb|EC891170.2|EC891170
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|67016223|gb|CO444972.1|CO444972
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|67013235|gb|CO441984.1|CO441984
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: AACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|21987903|gb|BQ779431.1|BQ779431
genomic: AACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAGEST: gi|32165003|gb|CD670321.1|CD670321
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: CATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGEST: gi|148951041|gb|EC896695.2|EC896695
genomic: CATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgctgcggacgagatcccgtatcatttcgctgcttgttttgcgggatcgggatgttgggccaaatccattttgatggtggccgtgtagatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA