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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgctgcggacgagatcccgtatcatttcgctgcttgttttgcgggatcgggatgttgggccaaatccattttgatggtggccgtgtagatctc...

Basic information

species Zea mays
transcript GRMZM2G044027_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 2
-------------GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcg---ctgcggacgagatcccgtatcatttcgctgcttgttttgcggg---atcgggatgttgggccaaatccattttgatggtggccgtgtagatctc
             || |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||   |       | |  |    |||| ||||||   || | |  ||||  |   || |||  ||| |     ||  | ||   ||  || ||   || ||  
TGTGTGTGTGCAGGCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcatttt--tgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-

upper sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 3
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcg---ctgcggacgagatcccgtatcatttcgctgcttgttttgcggg---atcgggatgttgggccaaatccattttgatggtggccgtgtagatctc
|| |||||| ||||||| ||||| || || || ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||   |       | |  |    |||| ||||||   || | |  ||||  |   || |||  ||| |     ||  | ||   ||  || ||   || ||  
GCGAACCTGAGGATCCTCGTCACCGGCGGAGCTGGCTTCATCGGCTCGCACCTCGTCGACAAGCTCATGGAGAACGAGAAGCACGAGgtacggatgagatcctgtagtacgatccgtttcatttt--tgttcggcttgcttgtctattggggggtttg-tggcattgactt--gtgccggtcggtgaggtca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211425107|gb|FK999878.1|FK999878
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149089880|gb|EE179165.2|EE179165
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148944203|gb|EC889294.2|EC889294
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148961007|gb|EE011707.2|EE011707
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|40334152|gb|CK368222.1|CK368222
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTT-CTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|32831707|gb|CD971385.1|CD971385
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|22473192|gb|BU037672.1|BU037672
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAACAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|6194647|gb|AW146751.1|AW146751
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|32830323|gb|CD970001.1|CD970001
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|89756809|gb|DY686692.1|DY686692
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGAATA-CTTTTTCCCTGGTTCAAAAAGATAACCTGAAGA
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGA-TAACTTTTTCACTGGTTCAAAA-GATAACCTGAAGA
EST: gi|148970766|gb|EE021510.2|EE021510
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|6020952|gb|AW065880.1|AW065880
EST:     CATCGGCTCTCTACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: CATCGGCTCGC-ACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|67016223|gb|CO444972.1|CO444972
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|21987903|gb|BQ779431.1|BQ779431
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148930565|gb|EE285203.2|EE285203
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|26558105|gb|CA830340.1|CA830340
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|71442898|gb|DR823948.1|DR823948
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|211425100|gb|FK999871.1|FK999871
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149107237|gb|EE189120.2|EE189120
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|211425097|gb|FK999868.1|FK999868
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|15632416|gb|BI679509.1|BI679509
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149081449|gb|EE170575.2|EE170575
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|211427693|gb|FK999880.1|FK999880
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|40337515|gb|CK371585.1|CK371585
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148951041|gb|EC896695.2|EC896695
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149066780|gb|EE286922.2|EE286922
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148960534|gb|EE011139.2|EE011139
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149089846|gb|EE179125.2|EE179125
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149097834|gb|EE183762.2|EE183762
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|211425101|gb|FK999872.1|FK999872
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|149097829|gb|EE183756.2|EE183756
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|67013235|gb|CO441984.1|CO441984
EST:     AACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: AACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|60672298|gb|DN475062.1|DN475062
EST:     TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148945878|gb|EC891170.2|EC891170
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|148956701|gb|EC902571.2|EC902571
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|211427695|gb|FK999882.1|FK999882
EST:     TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACCGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|32165003|gb|CD670321.1|CD670321
EST:     CATGGAGAACGAGAAACACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: CATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
EST: gi|6637013|gb|AW261285.1|AW261285
EST:     TCATCGGCTCGCACCTCGTGGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 296

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 497

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 467

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 931

GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgc ... ttacgatcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGATAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTCATCCGCCATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCACCTCGTGGACAGGCTCATGGAGAACGAGAAACACGAGgtacgtgcgctgcggacgagatcccgtatcatttcgctgcttgttttgcgggatcgggatgttgggccaaatccattttgatggtggccgtgtagatctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA