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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttccatgtcacccgttgttattgtggcatcttccataatgatttatttcttaactcatctgcttctgtgcatgaaactatgtgtag

Basic information

species Zea mays
transcript GRMZM2G043983_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043983_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g20750.1 (Oryza sativa), 5'ss of exon 3
CGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttccatgtcacccgttgttattgtggcatcttccataatgatttatttcttaactcatctgcttctgtgcatgaaactatgtgtag
 ||||||||||| ||||||||||||||| | |||    |||||||||| |||||||||||  | ||||| ||||| |||||||||||| ||||||||||||||||| |  |||  |     | ||||       | || |||| ||   |||||  |||||  |  | || ||   ||| || | | |  ||
TGTTTTTATGGGTTCCTTAGAAGTTCCATCTCAGTCAACTGAAACTATAAAAGTTCCAACATCACATTACGAATTCGGTGCCAATTTTATAGATCCAAAGgtttgtctgtatggaattgaatattatga--attttttgcatagtg---tattttgtaacttgt--gattttgaa-atggaattgtctacag

upper sequence: GRMZM2G043983_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 3
CGTTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGGGTCTGAAACTATTAAAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttccatgtcacccgttgttattgtggcatcttccataatgatt---tatttcttaactcatctgcttctgtgcatg---aaactatgtgtag-----------------------
||| || |||||  ||   ||| ||||  | ||    ||||||||||||||| | ||||||||||||||||| ||||| || || ||| |||| ||||||||  |  |   | |      ||  | || ||| |  |  | || || |    |  |    ||||  | || ||   || |||   ||   | |  | |                       
CGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAGgtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149065577|gb|EE286699.2|EE286699
EST:     AAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGCGTG
genomic: AAGTTCCAACTGCTCATTATGAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctatgtgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGCGTG
EST: gi|6101993|gb|AW126463.1|AW126463
EST:     GAATTTGGTGCCAATTTTTTAGATCCAAAG                         TTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGCGTG
genomic: GAATTTGGTGCCAATTTTTTAGATCCAAAGgtttgtttcc ... ctatgtgtagTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCTTAATGCTCGCGTG