1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGGAGCTGGACCAGAAACTTCGCCATGCTAACCGTCTTTCGTCAGGGGTCATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggtttgccgtatcaattgacggagtggttctccttcgtccttctgttataaaaatcattcgttccattccag
species | Zea mays |
transcript | GRMZM2G043893_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGTGACGTGTEST: gi|149001041|gb|EE038290.2|EE038290
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|76913696|gb|DV165228.1|DV165228
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGEST: gi|74236862|gb|DT644776.1|DT644776
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACG
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|148958193|gb|EC904398.2|EC904398
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|71436982|gb|DR818032.1|DR818032
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|71758309|gb|DR956246.1|DR956246
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|89252259|gb|DY624045.1|DY624045
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CCTGCCAAGGTCTTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|71318207|gb|DR795866.1|DR795866
genomic: CCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGTEST: gi|74236861|gb|DT644775.1|DT644775
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
EST: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTG GTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
genomic: CATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggt ... tccattccagGTGCTCTCGCGGAGGCGGCGGCGAAGATCGCTTCGACGTACAGCGACGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGAGCTGGACCAGAAACTTCGCCATGCTAACCGTCTTTCGTCAGGGGTCATGCTTGCGAGAGATCTTGTGAACTCTCCTGCCAATGTCCTTACCCCTGgtcagtaggtttgccgtatcaattgacggagtggttctccttcgtccttctgttataaaaatcattcgttccattccag
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