1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCAATGGAGATGTTCCCATCCAGAGTTGCCAAGGCGGTTTTCCTTTGTGCAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAGgtgggtctccagccccagagttaactggttgaacaattgacattagcaacgaattaaaagacaagaacactaaatgttgcctttgtatggcatcaaatcagcattgtcttcctatgatcatgtcctgatgccgtccttgcactccag
species | Zea mays |
transcript | GRMZM2G043579_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAG ATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAACEST: gi|71323462|gb|DR798378.1|DR798378
genomic: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAGgtgggtctcc ... tgcactccagATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAAC
EST: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAG ATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAACEST: gi|50335238|gb|CO530364.1|CO530364
genomic: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAGgtgggtctcc ... tgcactccagATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAAC
EST: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAG ATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAAC
genomic: CAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAGgtgggtctcc ... tgcactccagATGGACACGAACGGTACTCTCCAAAAGGCGCAGGAATTTGTCTACTCCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAATGGAGATGTTCCCATCCAGAGTTGCCAAGGCGGTTTTCCTTTGTGCAGCGATGCTGGCAAACGGGAACAGTGCCCTCGACATGTTCCAAAAGCAGgtgggtctccagccccagagttaactggttgaacaattgacattagcaacgaattaaaagacaagaacactaaatgttgcctttgtatggcatcaaatcagcattgtcttcctatgatcatgtcctgatgccgtccttgcactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG