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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgccatactcctacgactaccattgctcctagttcagtagcgttagatcttctgttataactttaattcgatactaacatcataccatggcta...

Basic information

species Zea mays
transcript GRMZM2G043279_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043279_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g30050.1 (Oryza sativa), 5'ss of exon 3
GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatac-atgccata----ctcctacgactaccattgc--tcctagttcagtagcgttagatcttc---tgttataactttaattcgatactaacatcataccatggcta
| ||||| |||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||  ||  ||||    |    ||  |||| | ||   ||  |      |   | ||||  |||   || | | |  ||  ||| | |||   | | ||         
GGCGGCGCTGCGTGAGGCGTACAAGAAGAAGAGCCTCCTCCCCCTCGACCTCCGCCCCAAGAAGACCCGCGCCATCCGCCGCCGCCTCACCAAGCACCAGgtataagatttcataaaaccgtgcacacctactactgatatctaaaactcatgctgatagagattcacatggtgtcatcttccttcaa-acttttagctta---------

upper sequence: GRMZM2G043279_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g30730.1 (Oryza sativa), 5'ss of exon 3
GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgccatactcctacgactaccattgctcctagttcagtagcgttagatcttctgttataactttaattcgatactaacatcataccatggcta-----
| ||||| || ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||| | || || ||||||||||||||||| |  | |    |    | ||    |   || | || |  |     |  |||| |  |||||    |     |  | | || |||     ||  ||     
GGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCGCTCGACCTCCGCCCCAAGAAGACCCGCGCCATCCGCAGGCGCCTCACCAAGCACCAGgtatagaaacaa----ctcgtgtctcttctctttctttgtcccattcgaatgcatctacc-ttatactaattggatgtgaattacctcagttattgtttagggct

upper sequence: GRMZM2G043279_T02 (Zea mays), 5'ss of exon 3
lower sequence: EDP09570 (Chlamydomonas reinhardtii), 5'ss of exon 4
GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgccatactcctacgactaccattgctcctagttcagtagcgttag-atcttctgttataactttaattc--gatactaacatcataccatggcta-
                               | | | || ||||| ||||| ||| | ||||||||||| ||||||||||||  |||||||||| | |||||   || ||      || | |||       | |    |    |  ||    | ||     || | |  |||       | | |    |        ||  |  
-------------------------------ACCTTCCTGCCCCTGGACCTGCGCGCCAAGAAGACCCGCGCCATCCGCCGCGCTCTGACCAAGGAGCAGgtgagca-gctgggg-ccaaagacg--tgggggtgggggcatggatgcacggggatgaggagtaagaggtttgggggagggtgccggaagagggttttgtgtgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29945190|gb|CB815515.1|CB815515
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|9461266|gb|BE453647.1|BE453647
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTTTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29543365|gb|CB603761.1|CB603761
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|9566345|gb|BE475854.1|BE475854
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTTTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACT
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACT
EST: gi|14243104|gb|BG840769.2|BG840769
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211326012|gb|FL295531.1|FL295531
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTTTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186245|gb|FL001309.1|FL001309
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|93014765|gb|EB640285.1|EB640285
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60399359|gb|DN232173.1|DN232173
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60357057|gb|DN224030.1|DN224030
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29544601|gb|CB604981.1|CB604981
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|31909229|gb|CD650814.1|CD650814
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29543970|gb|CB604350.1|CB604350
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29945476|gb|CB815658.1|CB815658
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29130441|gb|CB381145.1|CB381145
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29543506|gb|CB603888.1|CB603888
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAG
EST: gi|31909231|gb|CD650815.1|CD650815
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186248|gb|FL001312.1|FL001312
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211188645|gb|FL001319.1|FL001319
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|27575911|gb|CA998605.1|CA998605
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186239|gb|FL001303.1|FL001303
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60337004|gb|DN203977.1|DN203977
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211191050|gb|FL001336.1|FL001336
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGMGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|91876361|gb|EB406318.1|EB406318
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|14242881|gb|BG840284.2|BG840284
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|149205088|gb|ES700684.1|ES700684
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|31997746|gb|CD661753.1|CD661753
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|14243953|gb|BG841678.2|BG841678
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60348928|gb|DN215901.1|DN215901
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29945474|gb|CB815657.1|CB815657
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29130589|gb|CB381293.1|CB381293
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29543685|gb|CB604065.1|CB604065
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|14243636|gb|BG841353.2|BG841353
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211188648|gb|FL001322.1|FL001322
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211107167|gb|FL250491.1|FL250491
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60351256|gb|DN218229.1|DN218229
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|26557740|gb|CA829975.1|CA829975
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211107163|gb|FL250487.1|FL250487
EST:     GCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: GCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186250|gb|FL001314.1|FL001314
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60354838|gb|DN221811.1|DN221811
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCCCCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|28910454|gb|CB331447.1|CB331447
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211191047|gb|FL001333.1|FL001333
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211188649|gb|FL001323.1|FL001323
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186240|gb|FL001304.1|FL001304
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|60355130|gb|DN222103.1|DN222103
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|28987063|gb|CB351446.1|CB351446
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211191049|gb|FL001335.1|FL001335
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|28931339|gb|CB334700.1|CB334700
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|76012855|gb|DT940025.1|DT940025
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|28568913|gb|CB280788.1|CB280788
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|5499443|gb|AI855310.1|AI855310
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCCCCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211188653|gb|FL001327.1|FL001327
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGA
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGA
EST: gi|211191051|gb|FL001337.1|FL001337
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCCCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|31997748|gb|CD661754.1|CD661754
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|32925081|gb|CF029893.1|CF029893
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTTTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTATTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|9953338|gb|BE639921.1|BE639921
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTTTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|28983776|gb|BQ538782.2|BQ538782
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186242|gb|FL001306.1|FL001306
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|29130735|gb|CB381439.1|CB381439
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211188657|gb|FL001331.1|FL001331
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCGTG
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATG
EST: gi|211186241|gb|FL001305.1|FL001305
EST:     TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAG                         CTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCC
genomic: TCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 744

GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATGAGGAAGTATGCTATCAAGGCCTAGGTCAGAACTGTGAGATGCTGCGCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 514

GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATGAGGAAGTATGCTATCAAGGCCTAGGTCAGAACTGTGAGATGCTGCGCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 563

GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATGAGGAAGTATGCTATCAAGGCCTAGGTCAGAACTGTGAGATGCTGCGCTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 304

GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgc ... tgtcctgcagCTCTCTCTGAAGACCGAGAGGGAAAAGAAGCGTGAGAAGTACTTCCCCATGAGGAAGTATGCTATCAAGGCCTAGGTCAGAACTGTGAGATGCTGCGCTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCGGCGTTGCGGGAGGCGTACAAGAAGAAGAACCTGCTCCCCCTCGACCTCCGCCCTAAGAAGACCCGTGCCATCCGCCGCCGTCTGACCAAGCACCAGgtatacatgccatactcctacgactaccattgctcctagttcagtagcgttagatcttctgttataactttaattcgatactaacatcataccatggcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG