1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCGCGGCGGGTGGCCGACCACTACAGCGCGCGGTCCAACCAGACACTCGAGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctcaattcagtttactgccctatcgaaccgtccctggattcttgattaaaatgggggacccgtggtgtttgatacatcctgtgagtaactgcactgacggagtaactgttcaatttgtgtgtttggacag
species | Zea mays |
transcript | GRMZM2G042398_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG ATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGACTGCGTTCTTEST: gi|211031437|gb|FL127269.1|FL127269
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacagATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGACTGCGTTCTT
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG ATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGACTGCGTTCTTEST: gi|211188173|gb|FL095400.1|FL095400
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacagATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGACTGCGTTCTT
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG ATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGAEST: gi|211185782|gb|FL095398.1|FL095398
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacagATCAAGAGTGTTTTGGTCCAGTTGTATGCACGCCCGGGTGA
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG GEST: gi|211185782|gb|FL095398.1|FL095398
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacag-
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG GEST: gi|211188181|gb|FL095408.1|FL095408
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacag-
EST: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGG ATCAAGAGTGT
genomic: AGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctca ... gtttggacagATCAAGAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCGGCGGGTGGCCGACCACTACAGCGCGCGGTCCAACCAGACACTCGAGGAACGCGAGAACAGCCCCATCATCCACCTCAAGAAGCTCAACAACTGGgtgggtctcaattcagtttactgccctatcgaaccgtccctggattcttgattaaaatgggggacccgtggtgtttgatacatcctgtgagtaactgcactgacggagtaactgttcaatttgtgtgtttggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA