1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattctctaaactggtttcctatttctgtagatttactgtgtcttgctgttgaattggtttttatctgtccgcatgcaaggcatggtgtcatttt...
species | Zea mays |
transcript | GRMZM2G040843_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|32803744|gb|CD955980.1|CD955980
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GATCCGGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|78108809|gb|DV527226.1|DV527226
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|13198364|gb|BG354284.1|BG354284
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCTEST: gi|32803583|gb|CD955819.1|CD955819
genomic: GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
EST: GATCCCGGCCAACATTACTGTGGCAG CTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
genomic: GATCCTGGCCAACATTACTGTGGCAGgtttgcattc ... ttttgtgcagCTCACAGTGGCATGCATCAAGATGAACAGACCAGAACTTGCTGCCAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTGGTCATACCACAATGGAGGATCCTGGCCAACATTACTGTGGCAGgtttgcattctctaaactggtttcctatttctgtagatttactgtgtcttgctgttgaattggtttttatctgtccgcatgcaaggcatggtgtcatttt
- - - - - - - - - TGGAGG
- - - - - - - - - GGAGGA
- - - - - - - - - - GAGGAT