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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGACAATTCCACTTGATGGTGATGAGGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAAGCCGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtaatgttgataatgggtttggttgtttttgttttggctactctgcattccctgctttaattttggtacctgataaaaactgggcttcag

Basic information

species Zea mays
transcript GRMZM2G040843_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040843_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g32730.1 (Oryza sativa), 5'ss of exon 3
CGGACAATTCCACTTGATGGTGATGAGGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAAGCCGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtaatgttgataatgggtttggttg-----tttttgttttggctactctgcattccctg-ctttaattttggtacctgataaaaactgggcttcag
|| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  | |  ||||||   | | |      |  |  |||| |||||||||| |   ||  || | |  | | ||  ||||  |     || |||||
CGAACAATTCCACTCGATGGAGATGAAGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAGGCAGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtagagctactaatggagatagctagcacatcctcttttttgctactctgcttctactaactcttaactggatatgtgattgat----ggtttcag

upper sequence: GRMZM2G040843_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G31920.1 (Glycine max), 5'ss of exon 2
CGGACAATTCCACTTGATGGTGATGAGGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAAGCCGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtaatgttgataatgggtttggttgt--ttttgttttggctactctgcattccctgctttaatt----ttgg--tacctgataaaaactgggcttcag
 ||||| ||||  | |||||||||||   |||||| || ||||| ||||||||||| ||||| || || || || || ||||| || || ||||||||||||||  |  |||||    |   | |   | || | ||   ||          | | |  ||| |    ||||  | |   | | | |   |   ||||
AGGACAGTTCCTTTGGATGGTGATGATTCTGCAACAGAAGAGGTTTTGGATCCTGACTTTGGAGAGGCAGCCATTGGGCGTGTTGCTCCAGTTGATTCAGgtaaaataaataatcaaatcaatagaaatattttcttacatagctgaagaaacttaccataactctccttggattgctgaacatatatatgatctcag

upper sequence: GRMZM2G040843_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv06s0061g01520.t01 (Vitis vinifera), 5'ss of exon 4
CGGACAATTCCACTTGATGGTGATGAGGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAAGCCGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtaatgttgataatgggtttggttgtttttgttttggctactctgcattccctgctttaattttggtacctgataaaaactgggcttcag--------------
|| ||  |||||||||||||||||||   ||||||||| || || ||||||||||| ||||| || || ||||| |||||||| ||||| |||||||| ||||| |  |||| |  |||   |    ||    ||    | | ||  || | |   | | | ||   |  | | |          || ||              
CGCACTGTTCCACTTGATGGTGATGATTCTGCAACTGAAGATGTATTGGATCCTGACTTTGGTGAGGCAGCAATTGGCCGTGTTGCACCCGTTGATTCTGgtaa-gcagatattctgttcaataagcttctcattaa--agtatggtttacttttatgagtatttacatttaa-attcttctcattttagttgctgagaaacca

upper sequence: GRMZM2G040843_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0074g00720.t01 (Vitis vinifera), 5'ss of exon 4
CGGACAATTCCACTTGATGGTGATGAGGATGCAACTGAGGAGGTCTTGGATCCTGATTTTGGGGAAGCCGCAATAGGCCGTGTGGCACCTGTTGATTCAGgtaat--------gttgataatgggtttggttgtttttgttttggctactctgcattccctgcttta----attttggtacctgataaaaactgggcttcag
|| ||| |||| || |||||||||||   |||||| || ||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||         |  ||  |||  ||  |  |   |  |||    | |  |  | |     || ||    || |  || | || ||  |  |   ||||||
CGCACAGTTCCCCTGGATGGTGATGACTCTGCAACAGAAGAGGTATTGGATCCTGATTTTGGAGAAGCAGCAATTGGCCGTGTTGCACCTGTTGACTCTGgtaaatcaatacagcagagcatgttttaagaagaactaatttcacttgcattagaatttaaactctagcaaatctaagttcatgttatgatgtcaacttcag