1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGGATGAGTGGAACGTCAACAAATGGGCATGGGAAGGGGCGCTTAAGGTTGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagccattttagtgcttttggtcaatttcctttttattcatcacaatattgaattattgattcagtggatgtgttttag
species | Zea mays |
transcript | GRMZM2G040401_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|78088016|gb|DV516409.1|DV516409
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|71417761|gb|DR804203.1|DR804203
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|29945235|gb|CB815538.1|CB815538
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|211165498|gb|FL341374.1|FL341374
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|71425704|gb|DR806844.1|DR806844
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|93017263|gb|EB642783.1|EB642783
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|211053449|gb|FL366040.1|FL366040
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|148949503|gb|EC894967.2|EC894967
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGGEST: gi|76915425|gb|DV165980.1|DV165980
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
EST: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATNNNNNNNCAG GGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
genomic: TGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagc ... tgtgttttagGGGAGCTTTATGCTAGGGCATTTCTCAGAGAGGGTGAACCACATCCGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGATGAGTGGAACGTCAACAAATGGGCATGGGAAGGGGCGCTTAAGGTTGTCAGCAAGGGAGAGGAATGCATCATTAAACTGGAAGATAAAAAAACAGgtattatagccattttagtgcttttggtcaatttcctttttattcatcacaatattgaattattgattcagtggatgtgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA