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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctccagtactattttgcatcctatcaaatctccagatattggtatacatttacccttttattaacattttgcagttttgcccttaacataaaataatcacagttcatccttttgcttggtgactctgaacattgtttcgtcctgtgcaccag

Basic information

species Zea mays
transcript GRMZM2G040030_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040030_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g55850.1 (Oryza sativa), 5'ss of exon 3
AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgta-catctccag--tactattttgcatcctatcaaatctccagatattggtatacatttacccttttattaacattttgcagttttgcccttaacataaaataatcacagttcatccttttgcttggtgactctgaacattgtttcgtcctgtgcaccag
 |||||  | || |||||||||||||| |||||||| || || ||||| |||||||| || || ||||| |||| ||| |   |  |||| | | | ||  | |   ||  || || |    |  ||||    | |   |  ||   ||||   | |||   |||                                                                   
GGGAGAAATTGGAAAATGGATTGCGATCATTGCTGTCATCCTTCGTCTCTTCTTTCCTCGCCATTTCCCTGgtatcatttgatgtctactttctagaatgttgtttgatagcctgacaaaaattcacatgggtc-tcacaacaatgctttgtcatgttga--ttag------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211025292|gb|FL190145.1|FL190145
EST:     GCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGCCACTTCCCCAG                         AT-GGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCT
genomic: GCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCC-AGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCT
EST: gi|71332001|gb|DR802895.1|DR802895
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|24768158|gb|CA403287.1|CA403287
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|50328811|gb|CO523937.1|CO523937
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|71448580|gb|DR829630.1|DR829630
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|211027745|gb|FL190156.1|FL190156
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGCCACTTCCCAG                         ATTGGTTAGAGCTTCMTGGTTCCATCATCCTGCTCACAGTGGTC
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTC
EST: gi|60339980|gb|DN206953.1|DN206953
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTNTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|9732589|gb|BE511341.1|BE511341
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTTCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|93012048|gb|EB637568.1|EB637568
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|110204646|gb|EC886543.1|EC886543
EST:     TGCGATTATTGCTGTTATTTTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|71762702|gb|DR960639.1|DR960639
EST:     TGCGATTATTGCTGTTATTTTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|149097932|gb|EE183873.2|EE183873
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|74237689|gb|DT645603.1|DT645603
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|50328812|gb|CO523938.1|CO523938
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|4966608|gb|AI691464.1|AI691464
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCCCGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|21331512|gb|BQ486893.1|BQ486893
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76020028|gb|DT947198.1|DT947198
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|21331511|gb|BQ486892.1|BQ486892
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|78116265|gb|DV534652.1|DV534652
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGNTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|13149827|gb|BG320149.1|BG320149
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|20802396|gb|BQ293446.1|BQ293446
EST:     ACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: ACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|19822212|gb|BQ048236.1|BQ048236
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|148964237|gb|EE015419.2|EE015419
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|60400506|gb|DN233313.1|DN233313
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGCCACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|78116264|gb|DV534651.1|DV534651
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|16925065|gb|BM078133.1|BM078133
EST:     CACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: CACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76010700|gb|DT937870.1|DT937870
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|148972170|gb|EE023041.2|EE023041
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76292706|gb|DV032274.1|DV032274
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|148941605|gb|EC886544.2|EC886544
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|91053646|gb|EB164064.1|EB164064
EST:     TGCGATTATTGCTGTTATTTTGCGTTTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|18168713|gb|BM338553.1|BM338553
EST:     ATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCGCAGTGGTCGCCCCTA
genomic: ATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|67034400|gb|CO462950.1|CO462950
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76011638|gb|DT938808.1|DT938808
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76018464|gb|DT945634.1|DT945634
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGCCACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|60401532|gb|DN234339.1|DN234339
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|20336921|gb|BQ172551.1|BQ172551
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|71762888|gb|DR960825.1|DR960825
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|149010166|gb|EE041979.2|EE041979
EST:     TGCGATTATTGCTGTTATTTTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|148971030|gb|EE021866.2|EE021866
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|149097933|gb|EE183874.2|EE183874
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|86472205|gb|DY238575.1|DY238575
EST:     ATTATTGCTGTTATTCTGCGTTTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: ATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76010827|gb|DT937997.1|DT937997
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|5761786|gb|AI966939.1|AI966939
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|9254930|gb|BE345398.1|BE345398
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|20208279|gb|BQ134368.1|BQ134368
EST:     TGCGATTATTGCTGCTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|76934209|gb|DV173767.1|DV173767
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|148972171|gb|EE023042.2|EE023042
EST:     TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: TGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
EST: gi|18167564|gb|BM337404.1|BM337404
EST:     ATTATTCCTGTTATTCTGCGTCTATTCTTTCCGCGACACTTCCCAG                         ATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA
genomic: ATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 224

AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTAGCCTGTTCGCGGACAGCTTCAGGGGAGACCTCGTTGGTGTCTTCATATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 653

AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTAGCCTGTTCGCGGACAGCTTCAGGGGAGACCTCGTTGGTGTCTTCATATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 692

AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTAGCCTGTTCGCGGACAGCTTCAGGGGAGACCTCGTTGGTGTCTTCATATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 574

AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctcc ... tgtgcaccagATTGGTTAGAGCTTCCTGGTTCCATCATCCTGCTCACAGTGGTCGCCCCTAGCCTGTTCGCGGACAGCTTCAGGGGAGACCTCGTTGGTGTCTTCATATG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAGAGGTGGGGAAATGGATTGCGATTATTGCTGTTATTCTGCGTCTATTCTTTCCACGACACTTCCCAGgtacatctccagtactattttgcatcctatcaaatctccagatattggtatacatttacccttttattaacattttgcagttttgcccttaacataaaataatcacagttcatccttttgcttggtgactctgaacattgtttcgtcctgtgcaccag

- - - - - - - - - - - - - - -  GCTGTT