1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaacttatacttgctttttgcctgtgtcctctattgattgattgagattaacaaagcccccaaaaaatacctgcag
species | Zea mays |
transcript | GRMZM2G039325_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|71444483|gb|DR825533.1|DR825533
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|149113193|gb|EE295942.2|EE295942
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|148943243|gb|EC888304.2|EC888304
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|148967769|gb|EE019046.2|EE019046
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|76930993|gb|DV172583.1|DV172583
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCCEST: gi|71444482|gb|DR825532.1|DR825532
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATTAAATGATGAGAGAAAGGGTGCATTGGCTGCEST: gi|71439208|gb|DR820258.1|DR820258
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGAT-AAATGATGAGAGAAAGGCTGCATTGGCTGC
EST: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAA AACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
genomic: AGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaac ... atacctgcagAACCTTGAAGTTAAAAAGATAAATGATGAGAGAAAGGCTGCATTGGCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACAGATGAATTGGAGAAGATGGCTGAGAAACTCAAGCTGACAGAATCTCTCCTTGAAAGCAAAgtaccacaacttatacttgctttttgcctgtgtcctctattgattgattgagattaacaaagcccccaaaaaatacctgcag
- - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA