1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttaccaagtctcgttgtaacagtagtggtatttgaattttaaatggtcatttccatggcttacctttgtggaatgttttttctatactctgccag
species | Zea mays |
transcript | GRMZM2G039263_T02 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAGEST: gi|67021395|gb|CO450144.1|CO450144
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttacc ... actctgccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAG
EST: TGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAGEST: gi|33092579|gb|CF052573.1|CF052573
genomic: TGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttacc ... actctgccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAG
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAGEST: gi|61119168|gb|DN560129.1|DN560129
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttacc ... actctgccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAG
EST: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG CTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAG
genomic: ATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttacc ... actctgccagCTTGCTATGCGTGAAGCCTGCAAATATGTTGAGGAAAAGTTAGCAGTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGGgtgtgttaccaagtctcgttgtaacagtagtggtatttgaattttaaatggtcatttccatggcttacctttgtggaatgttttttctatactctgccag
- - - - - - - - TGAAGA