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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattcctagcagcaaaatatgaagggaaaaatgttttgattgcttctttgcggtttatttatattctgctatcaatttctag

Basic information

species Zea mays
transcript GRMZM2G039263_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 5'ss of exon 3
ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattcctagcagc---aaaatatgaagggaaaaatgttttgattgcttctttgcggtttatttatattctgctatca--atttctag
||||| ||||| ||||||||||||||||| || || |||||||||||||||||  | | |||||||||||| ||||||||||| |||||||||||  |  |||||   ||  |   |         |    || ||| |  |||| |  ||| || | || || |      |||  |||
ATGCTTGTGGATGATATTGGTGATGTTACCATAACAAATGATGGAGCAACCATTTTGAGGATGTTGGAAGTCGAGCATCCAGCAGCCAAGgtgatgtcaggcagcttaaaggtgccatctcctttttcccctggttgttgttttgtg-cttagttgttttttggtcctgttattgttag

upper sequence: GRMZM2G039263_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 3
ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattcctagcagcaaaatatgaagggaaaaatgttttgattgcttctttgcggtttatttatattctgctatcaatttctag------------------
||||| || || |||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||| ||||||||       |  ||||   | ||   |      |  | | | |  | ||||      |  | ||     || |  | | | | |                  
ATGCTGGTTGATGATATTGGTGATGTAACAATTACTAATGATGGTGCTACAATACTCAAGATGTTGGAAGTTGAGCATCCAGCTGCCAAGgtaggattaaagagcatt-tctgtttgttgctttagtcttactcttgctttatatgatgct-atccaaagccaagattgttttgacacactcttgtttttgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378059|gb|FL215190.1|FL215190
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243917|gb|FL215137.1|FL215137
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250615|gb|FL215178.1|FL215178
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380719|gb|FL215213.1|FL215213
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211383349|gb|FL215222.1|FL215222
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211246157|gb|FL215157.1|FL215157
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250617|gb|FL215180.1|FL215180
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380718|gb|FL215212.1|FL215212
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|149010855|gb|EE042239.2|EE042239
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250616|gb|FL215179.1|FL215179
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248384|gb|FL215161.1|FL215161
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250625|gb|FL215188.1|FL215188
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAT                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378064|gb|FL215195.1|FL215195
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248396|gb|FL215173.1|FL215173
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAT                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243918|gb|FL215138.1|FL215138
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250618|gb|FL215181.1|FL215181
EST:     TGGAGCAACCATACTTAAGATGTTGGAANGT-GAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCCAGATCGTGAGGTAGGAGATGGAACT
genomic: TGGAGCAACCATACTTAAGATGTTGGAA-GTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211383350|gb|FL215223.1|FL215223
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211246150|gb|FL215150.1|FL215150
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211490021|gb|FL368148.1|FL368148
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380720|gb|FL215214.1|FL215214
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250619|gb|FL215182.1|FL215182
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211246155|gb|FL215155.1|FL215155
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378070|gb|FL215201.1|FL215201
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380714|gb|FL215208.1|FL215208
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243914|gb|FL215134.1|FL215134
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378058|gb|FL215189.1|FL215189
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243916|gb|FL215136.1|FL215136
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211246156|gb|FL215156.1|FL215156
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|21331562|gb|BQ486943.1|BQ486943
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250620|gb|FL215183.1|FL215183
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380710|gb|FL215204.1|FL215204
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAA
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAA
EST: gi|211248391|gb|FL215168.1|FL215168
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378072|gb|FL215203.1|FL215203
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243920|gb|FL215140.1|FL215140
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250611|gb|FL215174.1|FL215174
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243922|gb|FL215142.1|FL215142
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380723|gb|FL215217.1|FL215217
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378069|gb|FL215200.1|FL215200
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|149083358|gb|EE172656.2|EE172656
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|149074901|gb|EE163349.2|EE163349
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211383347|gb|FL215220.1|FL215220
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211246147|gb|FL215147.1|FL215147
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380721|gb|FL215215.1|FL215215
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|149000083|gb|EE037198.2|EE037198
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248390|gb|FL215167.1|FL215167
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|60396669|gb|DN229537.1|DN229537
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378066|gb|FL215197.1|FL215197
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250624|gb|FL215187.1|FL215187
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250622|gb|FL215185.1|FL215185
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378065|gb|FL215196.1|FL215196
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243915|gb|FL215135.1|FL215135
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211241685|gb|FL215127.1|FL215127
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|33092579|gb|CF052573.1|CF052573
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCA-TTTTCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248395|gb|FL215172.1|FL215172
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243923|gb|FL215143.1|FL215143
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250623|gb|FL215186.1|FL215186
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243912|gb|FL215132.1|FL215132
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248385|gb|FL215162.1|FL215162
EST:     ATGGAGCAACCATACTTAAAATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGANGGTAGGAGATGGAAC
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGA-GGTAGGAGATGGAAC
EST: gi|71437844|gb|DR818894.1|DR818894
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243910|gb|FL215130.1|FL215130
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243921|gb|FL215141.1|FL215141
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378067|gb|FL215198.1|FL215198
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|31557915|gb|CD527127.1|CD527127
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250612|gb|FL215175.1|FL215175
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250613|gb|FL215176.1|FL215176
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211383348|gb|FL215221.1|FL215221
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211383351|gb|FL215224.1|FL215224
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378068|gb|FL215199.1|FL215199
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAAAC
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAA-C
EST: gi|211241686|gb|FL215128.1|FL215128
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211241684|gb|FL215126.1|FL215126
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211250614|gb|FL215177.1|FL215177
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211378062|gb|FL215193.1|FL215193
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGACCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243911|gb|FL215131.1|FL215131
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGYTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211380713|gb|FL215207.1|FL215207
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211243913|gb|FL215133.1|FL215133
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
EST: gi|211248389|gb|FL215166.1|FL215166
EST:     ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAG                         GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT
genomic: ATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 463

ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 201

ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 213

ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 173

ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattccta ... caatttctagGTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGCTAGTGGACGATATTGGTGATGTTACAATCACTAATGATGGAGCAACCATACTTAAGATGTTGGAAGTTGAGCATCCAGCCGCCAAGgtgattcctagcagcaaaatatgaagggaaaaatgttttgattgcttctttgcggtttatttatattctgctatcaatttctag

- - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG