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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGGTGTAGTTCGTGATGGTCCAGATGGAAGCTTAGCAACTGTTACTGAGTTTATGGTTAATGGGTCTCTCAAACAGTTCCTGAGGAAAAAAGACAGgcactacattttctaaagcaagaaataagaatatatttggtcttctatttctcctttatcaaaataaagcacttgtgcag

Basic information

species Zea mays
transcript GRMZM2G039106_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039106_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g54510.2 (Oryza sativa), 5'ss of exon 5
TTTATGGTGTAGTTCGTGATGGTCCAGATGGAAGCTTAGCAACTGTTACTGAGTTTATGGTTAATGGGTCTCTCAAACAGTTCCTGAGGAAAAAAGACAGgcactacattttctaaagcaagaaataagaatatatttggtcttctatttctcctttatcaaaataaagcacttgtgcag
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TTTATGGTGTAGTTCGTGACGGTCCTGATGGAAGCTTAGCAACTGTTACTGAGTTTATGATCAATGGATCTCTCAAACAGTTTTTGAGAAAAAAAGACAGgtattacttgtttaatcaaagaacactatgattcttttattctcaaatatccaaattct-aaattaaagcaactgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28187624|gb|CB179234.1|CB179234
EST:     GAGTTTATGGTTAATGGGTCTCTCAAACAGTTCCTGAGGAAAAAAGACAG                         GACAATAGATCGCCGGAAGAGAGTAATATTAGCCATGGATGCTGCATTTGG
genomic: GAGTTTATGGTTAATGGGTCTCTCAAACAGTTCCTGAGGAAAAAAGACAGgcactacatt ... acttgtgcagGACAATAGATCGCCGGAAGAGAGTAATATTAGCCATGGATGCTGCATTTGG