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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCGCCTCTTCGCCCCTATATGGCGGTCCCGAGGCCTCAAATCCGTGCCCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatctctcctttttctcgtccagttcccctcgcaataaacgcccccctgacgatccaatccactccag

Basic information

species Zea mays
transcript GRMZM2G038667_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766569|gb|DR964506.1|DR964506
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCCTGGGCTCCAGAAAAGGGTGTGTGCCTGGCACCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCC-TGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCC
EST: gi|71767672|gb|DR965609.1|DR965609
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCA
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCA
EST: gi|149014738|gb|EE044419.2|EE044419
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
EST: gi|211247273|gb|FL044130.1|FL044130
EST:     CCTACGTCNGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGGCTCCAGAAAAGGGTGTTGTGC-TGCCACC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGG-CTCCAGAAAAGGGTGT-GTGCCTGCCACC
EST: gi|71449062|gb|DR830112.1|DR830112
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
EST: gi|148948173|gb|EC893688.2|EC893688
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
EST: gi|60396179|gb|DN229048.1|DN229048
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
EST: gi|149084673|gb|EE174157.2|EE174157
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGCCCAGGCTGCAACCCTGGGCTCCAGAA
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAA
EST: gi|89252014|gb|DY623800.1|DY623800
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
EST: gi|148964028|gb|EE015172.2|EE015172
EST:     CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTG                         TGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC
genomic: CCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatct ... tccactccagTGTCCAGGCTGCAACCCTGGGCTCCAGAAAAGGGTGTGTGCCTGCCACCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCCGCCTCTTCGCCCCTATATGGCGGTCCCGAGGCCTCAAATCCGTGCCCTACGTCGGGGCACGCTGCTTCTCTTCCTTGTCCCGCTCATCTACTCTGgtacgaatctctcctttttctcgtccagttcccctcgcaataaacgcccccctgacgatccaatccactccag

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