1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgctgaatgtcttatttgttgacgctgtgttttttatttgttcagagtttggagccgatgttcataatgtaccataattatttcagcacttat...
species | Zea mays |
transcript | GRMZM2G037683_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAG CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGAEST: gi|76010783|gb|DT937953.1|DT937953
genomic: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgc ... ccaatttcagCTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGA
EST: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAG CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGAEST: gi|211187508|gb|FL065081.1|FL065081
genomic: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgc ... ccaatttcagCTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGA
EST: GCCTACCAAGGATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAG CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGAEST: gi|91873183|gb|EB403140.1|EB403140
genomic: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgc ... ccaatttcagCTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGA
EST: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAG CTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGA
genomic: GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgc ... ccaatttcagCTGTTGCTTCAGAAGTCTCAGTAGTACCGCCATCTCGTCTTATGGCACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACCAAGAATCCACCAAGGAGAAGCGGCGAGCACTGATTGCTCAAGgtgagcttgctgaatgtcttatttgttgacgctgtgttttttatttgttcagagtttggagccgatgttcataatgtaccataattatttcagcacttat
- - - - - - - - - AAGGAG
- - - - - - - - - AGGAGA
- - - - - - - - - - GGAGAA
- - - - - - - - - - - AGAAGC