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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGGTGAGGGTCTCATACCTACTCTACAGCATGCGCATGACATGCTATTGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactgcctgctgcttttttttagaataccgtataagttcttcccgctaatacctcgggttaaatcaatctcatcctgttggtgccctag

Basic information

species Zea mays
transcript GRMZM2G037624_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037624_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv02s0154g00540.t01 (Vitis vinifera), 5'ss of exon 3
GCTGGGTGAGGGTCTCATACCTACTCTACAGCATGCGCATGACATGCTATTGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactgcctgctgcttttttttagaataccgtataagttcttcccgctaatacctcgggttaaatcaatctcatcctgttggtgccc--tag-------------------
|||||| || || || ||||| ||| |||| ||||| |||||||||||||| ||| ||||| |||| || || ||||| ||||| |||||||||||        || ||      ||| |||||| | | |        | ||   | | || |    |  |    ||    ||| ||    |||   | |  |||                   
GCTGGGGGAAGGGCTTATACCGACTTTACAACATGCACATGACATGCTATTAGTGGAAAATGCAAAAACCGTGCCATACCGAGCAACTACTTATGGC----CAGgtgcttgaccatgcattttttga-agtgtttagacattttccctctctcaaggttgagaaagaactggtctaattaatttgagactcactagtgcattttttcccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149056983|gb|EE156539.2|EE156539
EST:     TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG                         TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: gi|31355523|gb|CD439880.1|CD439880
EST:     TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG                         TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: gi|5566862|gb|AI881773.1|AI881773
EST:     TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACGTATGGAGTG                         TTGGTTGAGAGCATGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: gi|76012269|gb|DT939439.1|DT939439
EST:     TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG                         TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
EST: gi|71450154|gb|DR831204.1|DR831204
EST:     TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTG                         TTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA
genomic: TGGTGAAAAATCCAAAGACAGTTCCATATCGAGCTACTACTTATGGAGTGgtcagtactg ... ggtgccctagTTGGTTGAGAGCACGTCCTTGTGGAAGATGCATGATCTGCACAGCAATGAA