Sequence
atgc intronic sequence ATGC exonic sequenceACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtagctgtaatgaagcattgtgttattctataggagtggcgtgcttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G037585_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g71000.1 (Oryza sativa), 5'ss of exon 3
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcat-ctagtctccggaatattccatgagtgcctgtagctgta-atgaagcattgtgttattctataggagtggcgtgcttc
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ACTAACCTGGTCAATCTAATTGGCTATTGTGCTGATGGTGACCAGCGCCTTCTTGTCTATGAGTTTATGCCATTGGGATCACTGGAAGACCATTTGCATGgtttgtctatcttctccttgcctttctagtctt-gcaagagtccatgggcgcttgaagcaatgtacataaagtagtagtactgcattattgtgaagtacta-
upper sequence: GRMZM2G037585_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA15G10360.1 (Glycine max), 5'ss of exon 3
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtagctgtaatgaagcattgtgttattctatagga-gtggcgtgcttc
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CCAAATCTTGTGAACTTAATTGGCTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGgtcagattgctttcttttt-taactgatatctttgcttcttcaactattgtgctttcatattataaaactataaaatattaaatttcatgttatttcaatc
upper sequence: GRMZM2G037585_T01 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA13G28730.1 (Glycine max), 5'ss of exon 3
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtagctgtaatgaagcattgtgttattctatagga-gtggcgtgcttc
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CCAAATCTTGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTGCTTGTTTATGAATTCATGCCATTGGGATCTTTGGAGGATCATTTACATGgtcagattgcattcttttt-taactgatacctttgcttcttcaattatagtgctttcatattataaagctataaaatatttaatttcatgttgattcaatc
upper sequence: GRMZM2G037585_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv05s0020g01770.t01 (Vitis vinifera), 5'ss of exon 3
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtag-ctgtaatgaagcattgtgttattctat-aggagtggcgtgcttc---
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CCAAACCTTGTTAACTTGATTGGTTATTGTGCTGATGGGGACCAACGTCTGCTTGTCTATGAGTTTATGCCATTGGGATCATTGGAGGATCATTTACATGgttagattgcctgccttttgtgcactagtt-----attaacccataaataacaaaagacagttttgctattttttgcatgtagatcaaccatgctgtcatttgatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101388312|gb|EB816168.1|EB816168EST: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATG ATCTGCCACCAGATAAAGAACCTCTAGACTGGAACACACGGATGAAGATAG
genomic: TCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtat ... atttgtgtagATCTGCCACCAGATAAAGAACCTCTAGACTGGAACACACGGATGAAGATAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTAACCTGGTCAATCTAATTGGCTACTGTGCTGACGGTGACCAACGCCTTCTTGTTTATGAGTTTATGCCATTGGGGTCACTAGAAGATCATCTGCATGgtttgtgtatctcctctttgtcatctagtctccggaatattccatgagtgcctgtagctgtaatgaagcattgtgttattctataggagtggcgtgcttc
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