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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAAGTGAAGAAGAAACAGTTCTTTCGAAACTTCATTACTATTACACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcggtcccaaatttcacttttaacatgattatatgcttctgggtttcttcctgcctaactcacatttgatctcaatag

Basic information

species Zea mays
transcript GRMZM2G037342_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037342_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 3
GTTCCAAGTGAAGAAGAAACAGTTCTTTCGAAACTTCATTACTATTACACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcggtcccaaatttcacttttaacatgattatatgcttctgggtttcttcctgcctaactcacatttgatctcaatag
||||||||| ||||||||||| || || || |||||||| ||||||||  ||||||||||  |||| ||| | |||||||| | |||||| ||||| |||| |||   | ||    || |  ||| || ||   || | ||| || | |  |  ||  |   |  |||||  ||| ||    
GTTCCAAGTTAAGAAGAAACAATTTTTCCGCAACTTCATGACTATTACGTTGTTTGGTGCGATTGGGACCCTAATCTCTTTCAGTGTAATTTCCCTCGgtaagttgttttcct--ctttaaattttacctggc-atgttcttttgtgctcatctctctcactcgtacattccatcacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148996402|gb|EE035697.2|EE035697
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|78119306|gb|DV537690.1|DV537690
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|71315380|gb|DR794294.1|DR794294
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|76921052|gb|DV168433.1|DV168433
EST:     CTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: CTGTTTGGTGCAGTTGGCACCTTGATCTCTTTT-ACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|32866161|gb|CF005843.1|CF005843
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCTTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|20300970|gb|BQ163913.1|BQ163913
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|71426858|gb|DR807908.1|DR807908
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|18964389|gb|BM660977.1|BM660977
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|50328971|gb|CO524097.1|CO524097
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|149058822|gb|EE156843.2|EE156843
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|76912611|gb|DV164818.1|DV164818
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|149015463|gb|EE045330.2|EE045330
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
EST: gi|148931601|gb|EC874712.2|EC874712
EST:     ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTG                         GCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG
genomic: ACTGTTTGGTGCAGTTGGCACCTTGATCTCTTTTACTGTAATATCCCTTGgtaggttcgg ... atctcaatagGCGCTCTAGGACTAATATCAAGGCTTAATATCGGCGCACTTGAACTGGGAG