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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGTTGGGGAGATTGCAAATTTTATAGCGTACATGATTGAGTCGGCGATCCTCGTCACGCCGCTAGGTGCACTCAACATTATTGTGAGgtatagtggtggatgcctccggtggtttgttctgaatgtgtctttgtatgtttctgatgagctttgttatgtgcag

Basic information

species Zea mays
transcript GRMZM2G037229_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037229_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g65310.1 (Oryza sativa), 5'ss of exon 3
TGCTTGTTGGGGAGATTGCAAATTTTATAGCGTACATGATTGAGTCGGCGATCCTCGTCACGCCGCTAGGTGCACTCAACATTATTGTGAGgtatagtggtgga--------tgcctccggtggt-----------ttgtt-ctgaatgtgtctttgtatg--tttctgatgagct-ttgttatgtgcag--------------------------------
||||||||||||||||||| || || || || |||||| |||   | ||  ||||||||||||||||||| ||||||| ||| ||||||||||| | |  | ||        ||  |  | ||||           ||||   | | ||| ||||||| ||  ||| |  |||  |  || ||||||||                                 
TGCTTGTTGGGGAGATTGCCAACTTCATTGCTTACATGTTTGCACCTGCTGTCCTCGTCACGCCGCTAGGAGCACTCAGCATAATTGTGAGgtagaatactagaattgaaattgttttagttggtgtccacatcatttgtaattcattgtttctttgtgtggatttgtactgaattactggtatgtgcatgtgtatgcttctggtgatttgttggggagtag