Sequence
atgc intronic sequence ATGC exonic sequenceCAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGgtcagtaaggtcatgatgattgtaccttaacaatgatatacattgttttagcatgctacactgcatctgctcacataatatcttttgatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G036050_T05 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 5'ss of exon 3
CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGgtcagtaaggtcatgatgattgtaccttaacaatgatatacattgttttagcatgctacactgcatctgctcacataatatcttttgatag
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CAAGTTTCAGATTTTGACTTGTTTACTTTGGACGATATTGATGCTGCATTCCAAAATGTTGTTAGATTGAAGTACTCACAGAACCACCTTTTGAATGgtcagtaag--catgctgtt--------------gatgtatatccttt------gctaaattacatccccttacatactattgattggcag
upper sequence: GRMZM2G036050_T05 (Zea mays), 5'ss of exon 3
lower sequence: Vv16s0050g00590.t01 (Vitis vinifera), 5'ss of exon 3
CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGgtcagtaa---ggtcatgatgattgtacct--taacaatgat-atacattg--ttttagcatgctacactgcatctgctcacataatatcttttgatag---
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CAAGTTTCAGACTTTGATTTGTTTACCCTGGATGATATTGATTCTGCTTTCCAAAACGTGACCAGATTAACATACTCTCAAAATTATCATCTATTTGgtaaggattttgttcagatcttttgtttttgttaatattaattaaacgttgcatttcagccctcaat-ttgcatggggatg-ggggtatctcagtgtgccaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361140|gb|CD445497.1|CD445497EST: ATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATG ATAAAGGTGAAGGAGTTGTTATTGCTCCACATGTGGCTGGGCATCTTTTNN
genomic: ATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGgtcagtaagg ... cttttgatagATAAAGGTGAAGGAGTTGTTATTGCTCCACATGTGGCTGGGCATCTTTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGTTTCAGACTTTGACTTGTTTACTCTAGATGATGTTGATGCTGCATTCCAAAATGTTGTGAGACTGAAGTACTCACAAAATTACCTTCTGAATGgtcagtaaggtcatgatgattgtaccttaacaatgatatacattgttttagcatgctacactgcatctgctcacataatatcttttgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG