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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcctctaccacctatcttcgaagtggtaacgagtttccccaatttaacaatgtcgttattctttgtgtatgtag

Basic information

species Zea mays
transcript GRMZM2G035922_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166825|gb|BM336664.1|BM336664
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCATAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17929588|gb|BM266548.1|BM266548
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18163235|gb|BM333074.1|BM333074
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17932547|gb|BM269507.1|BM269507
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167673|gb|BM337513.1|BM337513
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18172971|gb|BM348359.1|BM348359
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|19769925|gb|BQ034646.1|BQ034646
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCGCCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18171734|gb|BM341574.1|BM341574
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|45847194|gb|CN071137.1|CN071137
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167853|gb|BM337693.1|BM337693
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167661|gb|BM337501.1|BM337501
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGAAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18166622|gb|BM336461.1|BM336461
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|28985465|gb|CB350653.1|CB350653
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167256|gb|BM337095.1|BM337095
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|31405694|gb|CD484426.1|CD484426
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167472|gb|BM337311.1|BM337311
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCGCCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTCAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17930689|gb|BM267649.1|BM267649
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18171573|gb|BM341413.1|BM341413
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18169983|gb|BM339823.1|BM339823
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGATATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17930535|gb|BM267495.1|BM267495
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18162285|gb|BM332124.1|BM332124
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18172791|gb|BM348179.1|BM348179
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17931579|gb|BM268539.1|BM268539
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18164877|gb|BM334716.1|BM334716
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17932007|gb|BM268967.1|BM268967
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18170971|gb|BM340811.1|BM340811
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18165652|gb|BM335491.1|BM335491
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|71309373|gb|DR790976.1|DR790976
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCCCCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18162258|gb|BM332097.1|BM332097
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|211411852|gb|FL441860.1|FL441860
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18174284|gb|BM349672.1|BM349672
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18175023|gb|BM350411.1|BM350411
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18164162|gb|BM334001.1|BM334001
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18179153|gb|BM380363.1|BM380363
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|28986608|gb|CB351220.1|CB351220
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18166287|gb|BM336126.1|BM336126
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18166847|gb|BM336686.1|BM336686
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18170403|gb|BM340243.1|BM340243
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167659|gb|BM337499.1|BM337499
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|27521988|gb|CA989094.1|CA989094
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCCCCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17929699|gb|BM266665.1|BM266665
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18161978|gb|BM331817.1|BM331817
EST:     CAGAAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: CAG-AATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167933|gb|BM337773.1|BM337773
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCGCCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167782|gb|BM337622.1|BM337622
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167366|gb|BM337205.1|BM337205
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18174797|gb|BM350185.1|BM350185
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18167121|gb|BM336960.1|BM336960
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|28985498|gb|CB350669.1|CB350669
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18174118|gb|BM349506.1|BM349506
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17932291|gb|BM269251.1|BM269251
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17931043|gb|BM268003.1|BM268003
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18163876|gb|BM333715.1|BM333715
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17931951|gb|BM268911.1|BM268911
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18170193|gb|BM340033.1|BM340033
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18171321|gb|BM341161.1|BM341161
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|16922800|gb|BM075792.1|BM075792
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|29947024|gb|CB816443.1|CB816443
EST:     CCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAG
genomic: -CAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAG
EST: gi|18176078|gb|BM351162.1|BM351162
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18172782|gb|BM348170.1|BM348170
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|4775927|gb|AI664930.1|AI664930
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCGCCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|17929924|gb|BM266884.1|BM266884
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|16922351|gb|BM075537.1|BM075537
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|211184198|gb|FL244917.1|FL244917
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18175689|gb|BM350910.1|BM350910
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18169174|gb|BM339014.1|BM339014
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|18164591|gb|BM334430.1|BM334430
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAG-AGGCTTGCAGGCCAAGGAAAG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTA-GCTTGCAGGCCGAGGAAAG
EST: gi|12969846|gb|BG266686.1|BG266686
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCGCCGCCAGAGATACCTCCTAA                         TGCAGCCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
EST: gi|28986296|gb|CB351065.1|CB351065
EST:     TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAA                         TGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG
genomic: TCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 475

GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGGTTCAAGCTTAGGTAGTGTATCTGATGAGAAAGCCAGACTTGA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 307

GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGGTTCAAGCTTAGGTAGTGTATCTGATGAGAAAGCCAGACTTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 373

GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGGTTCAAGCTTAGGTAGTGTATCTGATGAGAAAGCCAGACTTGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 285

GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcct ... gtgtatgtagTGCAACCCTTATTTTTGAGGTGGAGCTAGTAGCTTGCAGGCCGAGGAAAGGTTCAAGCTTAGGTAGTGTATCTGATGAGAAAGCCAGACTTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGGCGAGGTTGCAAAAATTACATGCAAATCAGAATATGCATATGGAGCTGCAGGCTCACCACCAGAGATACCTCCTAAgtgagttcctctaccacctatcttcgaagtggtaacgagtttccccaatttaacaatgtcgttattctttgtgtatgtag

- - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG