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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAACTTCTCTGTCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtactactattactagtcactttgcttcctcatgccttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcag

Basic information

species Zea mays
transcript GRMZM2G035150_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G32220.1 (Glycine max), 5'ss of exon 3
---CGTCCAGGACAGCCAGCAATGCTTGATAGAGCTCATGGATAACTTCTCTGTCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtactactattact--agtcactttgcttcctcatgcc-ttagcatgcaacctacatttactgctatttgcattctcaaacatcactgtgagtgtttctatagtctcttcattttgctattgcag
     |    ||   |         |   | ||  |   |||| | |  |||    ||||||||||||| ||||||||||| ||| | ||||||||  ||||||| |||  |||  ||| |  || |||||   ||  |  |    | | ||||      || ||||||   ||||    |   |    |  |  |  |  ||| |                          
TGTTATTAGTGATGACTTCTGGGATTCATTGGAAATATCGGATGAATCTTCT---CTTGACGGTGAAGTTGGCAAAAGATTAAACCAGATGGTTCCCATTCCTgtaagtg-tacctttagtgcagccacttgattttgttttaaagtcatcatgt--ttcacctttactataattttttattgtattagttgccatttg-atttgtg-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092884|gb|DV521258.1|DV521258
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
EST: gi|50324082|gb|CO519208.1|CO519208
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
EST: gi|71427954|gb|DR809004.1|DR809004
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAANACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
EST: gi|74235679|gb|DT643593.1|DT643593
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAANACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
EST: gi|71449152|gb|DR830202.1|DR830202
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCTTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGATTCCTT
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTT
EST: gi|71427181|gb|DR808231.1|DR808231
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGAT
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGAT
EST: gi|76291810|gb|DV031378.1|DV031378
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTCA
EST: gi|50327717|gb|CO522843.1|CO522843
EST:     TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCT                         CATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTC
genomic: TCATTGACGGTGAAGTGGGCAAAAGATTGAACAACATGGTTCCTGTTCCTgttagtacta ... gctattgcagCATGTTCCTAAAACTAATGGAGAGATTCCTTCTGTTGACGAAGCCATTTC