1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTTTATTGGCCCTACTATTCTCGTGTCTTTCTTGGTTCTTCCATCTCTTTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttctttgatagtttcaggactgtggtgtttgttttctagattatggatgtttcataacgattatagggtagacctcgtgccagagactccaac...
species | Zea mays |
transcript | GRMZM2G034975_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAAEST: gi|76010385|gb|DT937555.1|DT937555
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAA
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTTAC-GAGGCTTTATTTTATGGAGGAGTTGCAEST: gi|78079427|gb|DV507839.1|DV507839
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTT-ACCGAGGCTTTATTTTATGGAGGAGTTGCA
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTACCCGAG-CTTTATTTTTATGGAGGAGTTGCEST: gi|71326147|gb|DR799760.1|DR799760
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTTACC-GAGGCTTTATTTT-ATGGAGGAGTTGC
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAAEST: gi|78082089|gb|DV510501.1|DV510501
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAA
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAAEST: gi|50325253|gb|CO520379.1|CO520379
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAA
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAAEST: gi|76933226|gb|DV173377.1|DV173377
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTTTACCGAGGCTTTATTTTATGGAGGAGTTGCAA
EST: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAG ATTTTCTTATACTATTCTT
genomic: TTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttc ... ttgtttgcagATTTTCTTATACTATTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTTTATTGGCCCTACTATTCTCGTGTCTTTCTTGGTTCTTCCATCTCTTTACTTGCGCAAAGTACTCTCAGCAGTGTTTGAAGATTCCTTGTTGACAGgtatcctttctttgatagtttcaggactgtggtgtttgttttctagattatggatgtttcataacgattatagggtagacctcgtgccagagactccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA