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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt...

Basic information

species Zea mays
transcript GRMZM2G034833_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttga---tatacaatatttcgccaacactttatgttaaatctcacagccccctgt--
| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||  | || |||  | |||     |||  |  || |    |  |   |||  | |  |  |  | |  |||  ||  | |           |||   
GCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTgtaagttcataca-tatgcaaatctgat---aaaattccctacttacataaactgtatgtactgatgtgttagccgtttcagtcca-tgaggagtttatctgctt

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA04G37560.1 (Glycine max), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt---
                                   | ||  | |||||||||||||| ||||| | ||||||||| |||||||| || ||||| ||  | |||||    | |  |   ||  |   | ||  | || || | |  || |   ||||  ||  |     |  ||  | | ||   | |  |       |||   
-----------------------------------TATGTGATAACTGCGTGGAGCGATTTGATCTTCACTGCCCTTGGGTTGGTCATTGCATTGGATTGgtaagggactaatgtttacatatcccaatctcacagtcttttt--ctatcattatattatgatctagaagaacaat-tcttgtgtttttccttttaatgttca

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaa-agcctgtattgctgttgatat--acaatatttcgccaacactttatgttaaatctcacagccccctgt
| | |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| || |||||||||||||| || |||||||| || || || ||||| ||| |||   |   |   | |||| |  | |    |  || | || || ||  | |  | ||| ||| |     |   || | | || | ||  |     |  
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtatgttggatcttttgtctcttgagtgttattttattctttttttctttttgtgtgaagaatgttttgggggaagagta-gcttaaccccattgttaagt--

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA19G27160.1 (Glycine max), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaa-cacttta----tgttaaatctcacagccccctgt
| | |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| || ||||| |||||||| || |||||||| || || || ||||| |||||||   |     | | |    |  | |         | || || ||  | |  | |     |   |  |  |||      |||| | | ||||        
GCTCTACAGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGATCATCACTGTCCTTGGGTTGGGCAGTGTATTGGGCTGgtaagttggatcttatatctcccaagtgttattttattcttttttctttttgtgtgaatttgggggaagagtatcttaatcccattaagtgtgacagaga-----

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G01290.1 (Glycine max), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaa-gtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt
| | ||||| || |  ||    || ||||| ||  ||||  | |||||||||||||| ||||| || ||||||||||||||||| || || || || || ||||     |||   | |  ||||   |  ||      |       |  |  | |||   ||| |   || | ||   |    |  || |||      |  
GCTCTACAGACCCCTCCGCGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCACCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacacccattctttcataacttcacatccatggtatccaaggaacactatacataggttatatacacagccctagcttcctatactaacatttgaata-

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA01G08200.1 (Glycine max), 5'ss of exon 2
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatat--acaatatttcgccaacactttatgttaaatctcacagccccctgt
| | ||| |||||||||| ||||| || ||||| ||||| || ||||| ||||| || |||||||||||||  || |||||||| || || || ||||| ||| |||   |   |   | | |     |     |  || | ||  | ||  | |  | ||| ||| |     |   || | | |||| ||  |     || 
GCTCTACCGGCCTCCTCGATGCTCGCACTGCTCAATCTGTAATAACTGTGTGGAACGGTTTGACCATCACTATCCTTGGGTTGGGCAGTGTATTGGGCTAgtatgttggatcttttgtctcctagtgttattttattcttttttcttttttgtgtgaagaatgttttgggggaagagta-gcttaatcccattgttaagtg-

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA05G38360.1 (Glycine max), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaa-gtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt
| | ||||| || |  |||   || ||||| ||  ||||  | |||||||||||||| ||||| |||||||||||||||||||| || || || || || ||||     |||   | |  ||||   | | |      |       |  |  | | |   ||| |    | | ||  ||    |  ||  ||      |  
GCTCTACAGACCCCTCCGTGCTTCTCATTGTTCAGTCTGTGATAACTGCGTGGAGCGATTTGATCATCACTGCCCATGGGTTGGTCAGTGTATTGGACTGgtaacaaccattctttcataacttcacatttatggtatccaaggaacactatacacaggttatatacatagccctagattccgatactggcatttgaatt-

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT5G41060.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt
| | || || || ||||| ||||| ||||| || || ||||||||||| || ||  | |||||||||||||| || |||||||| ||||| || |  |  |||||||| |    |   |  ||     || |  ||  |    ||   |   | || | || |||  |  || | |   |   |  |  |||        
GCTCTATAGACCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCACTGTCCTTGGGTTGGTCAATGTATTGCTCAAgtaagtttctcggtttttcgttttcctgtccgttagttt---ctgacatcagtctata-taattcatct-cattctccttgggaatttgcag--------

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: AT3G26935.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaagtttattaactaagcacttgtgactcagaaa-gcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt
| | || ||||| ||||| ||||| |||||||| || |||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| || ||| | ||||||  |  | | ||    |   | ||   |     |   ||      |  | | | | || ||  |  ||  || || |   | |  |||        
GCTCTATAGGCCGCCTCGCTGCTCGCATTGCTCAATTTGCAACAACTGCGTAGAAAGGTTTGACCATCACTGCCCTTGGGTCGGCCAATGTATTGGGATGgtaagtcaaa-atccaactgatcccgtctttaagctatccacataaaccatagtttcctaaatatcatct-catattctgatggttgttgcag--------

upper sequence: GRMZM2G034833_T02 (Zea mays), 5'ss of exon 3
lower sequence: Vv17s0000g00800.t01 (Vitis vinifera), 5'ss of exon 3
GTTGTACAGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTGGAGCGTTTTGACCATCACTGCCCATGGGTTGGACAATGCATAGGGCTTgtaag------tttattaacta-agcacttgtgactcagaaagcctgtattgctgttgatatacaatatttcgccaacactttatgttaaatctcacagccccctgt
| | || || |||||||| || || || || || || ||||| || || ||||| || ||||||||||||||||| |||||||| ||||| || || || ||||       | | ||||||  | ||| ||      | |       || |||  |||| | | | |   |       || | |  ||   | ||            
GCTTTATAGACCTCCTCGCTGTTCACACTGTTCAATATGCAATAATTGTGTGGAACGATTTGACCATCACTGCCCTTGGGTTGGTCAATGTATTGGACTGgtaatgaacattcttttaactgtatcacatgctttctaaatgtaaattaatgccattgacaaatactgcattatgggaacct-agatttgttgtctttatt------