1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTACGGGTTGAATTTCTGGAGGATGACATTTGTCGTAGAATGAAGTTTCGGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCCgtgagatcaccttctcctcttattacattatattgttctctattattcatggtcatatcatcactagtaatagaccgcggacagcttgcatatattatttccttgggttaaagcttagtggaccaggtgactagagcaggcatgtagtttgatgtgtgcacctcattgtttttttttcag
species | Zea mays |
transcript | GRMZM2G034536_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCC ACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAACEST: gi|101385086|gb|EB814588.1|EB814588
genomic: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCCgtgagatcac ... tttttttcagACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAAC
EST: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCCTATACAAGCC ACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAACEST: gi|88756868|gb|DY541009.1|DY541009
genomic: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCCgtgagatcac ... tttttttcagACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAAC
EST: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCC ACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAAC
genomic: GGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCCgtgagatcac ... tttttttcagACCATCGCAGCTATAGGTGGTATGGCATATTTTTTGGACAAAGACGGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACGGGTTGAATTTCTGGAGGATGACATTTGTCGTAGAATGAAGTTTCGGATGTTCGTTGCAAGAGATGTTATCATTATATTCCTTCTTATACAAGCCgtgagatcaccttctcctcttattacattatattgttctctattattcatggtcatatcatcactagtaatagaccgcggacagcttgcatatattatttccttgggttaaagcttagtggaccaggtgactagagcaggcatgtagtttgatgtgtgcacctcattgtttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG