1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcattactgcttggcctcatcttgtggcatatgtgcaaagtagcatggtactgcattggtaggcaccaaactatgccctcttcatgctagattatcacattgccatgtcacactgtttccagtctcttataactacaagcaatgaggttacaatatttgcag
species | Zea mays |
transcript | GRMZM2G034143_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTEST: gi|78113249|gb|DV531643.1|DV531643
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|71439660|gb|DR820710.1|DR820710
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|148995152|gb|EE034432.2|EE034432
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|18661324|gb|BM501354.1|BM501354
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: CCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|211492744|gb|FL134687.1|FL134687
genomic: CCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|31359325|gb|CD443682.1|CD443682
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|149020749|gb|EE045750.2|EE045750
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|211492749|gb|FL134692.1|FL134692
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|148943394|gb|EC888453.2|EC888453
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGATEST: gi|149088610|gb|EE177727.2|EE177727
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
EST: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAG GAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
genomic: AGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcat ... atatttgcagGAGTCCTTTTATTATGGATTGACGGATGAAGAATTAGTCCATGTTCATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGCTGGGGGTGCATCGTCAGGCAAAAGTACCGTGTGCAAGATGATCATTGATCAGCTCCGTGACCAGCGCGTTGTGGCTGTTACACAGgtttgtgcattactgcttggcctcatcttgtggcatatgtgcaaagtagcatggtactgcattggtaggcaccaaactatgccctcttcatgctagattatcacattgccatgtcacactgtttccagtctcttataactacaagcaatgaggttacaatatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT