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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaattccctttatcatcgcacagctcaattgttaataggattcataatacatctttcacttaccatttgtatag

Basic information

species Zea mays
transcript GRMZM2G032447_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211282619|gb|FL407046.1|FL407046
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211230112|gb|FL407869.1|FL407869
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTANACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211500775|gb|FL109952.1|FL109952
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|149105705|gb|EE291269.2|EE291269
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211223919|gb|FL407824.1|FL407824
EST:     ATCTGTACATCGGGAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|71428252|gb|DR809302.1|DR809302
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211048061|gb|FL385041.1|FL385041
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211273935|gb|FL428373.1|FL428373
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211217736|gb|FL411409.1|FL411409
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211500776|gb|FL109953.1|FL109953
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211480085|gb|FL429875.1|FL429875
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|211464166|gb|FL410745.1|FL410745
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
EST: gi|38687664|gb|CK144695.1|CK144695
EST:     ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAAT                         ATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC
genomic: ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaa ... atttgtatagATATATGGTAACAAGTTAGACAGTTTTATGAGAAACTTTGAGAAATCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGTACATCGGCAGTGAAGGAATCATTGAGAAATgtaagcctaattccctttatcatcgcacagctcaattgttaataggattcataatacatctttcacttaccatttgtatag

- - - - - - - - - AAGGAA