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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGTCGGGCGGTGCCAGCCTCAAGTCCCCGCTCTGGGACGTGAAGAAGGAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCCCTCATGGGgtcagttccaaactcggacacctctaatgcatgaagctgacactcagggctccgtctgcctgacatgacacgcaaggatggtttcttggtag

Basic information

species Zea mays
transcript GRMZM2G032351_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g23890.2 (Oryza sativa), 5'ss of exon 4
CGCCGTCGGGCGGTGCCAGCCTCAAGTCCCCGCTCTGGGACGTGAAGAAGGAGGACTCACGGCTGAGCCGGA-----AGT-----CGAGCC--GCCGCTCTTCCCTCATGGGgtcagttccaaactcggacacctctaatgcatgaagctgacactcagggctccgtctgcctgacatgacacgcaaggatggtttcttggtag
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----------CCGGGTC--CTTCAAGTCGCCGCTCTGGGACCTGAAGAAGGAGGAGTCCCGCCTGAGCCGGCTCGCCAGCGGCCGCAAGTCCGGCCGCTCCTCCCTCATGGGgtcag------actctcgcaccccacctgttcga--cagattgccgggacggcagtgacactgagagttgtgtctgtcca-tgctttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149094769|gb|EE180329.2|EE180329
EST:     GAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCCCTCATGGG                         GTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGC
genomic: GAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCCCTCATGGGgtcagttcca ... ttcttggtagGTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGC
EST: gi|211527476|gb|FL294698.1|FL294698
EST:     GAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCCCTCATGGG                         GTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGC
genomic: GAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCCCTCATGGGgtcagttcca ... ttcttggtagGTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGC