1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAATGCTTGTCTTCTTCAATCCAGTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttgctagctgccaaagatctgttcaattcatatatcttcaccctttgttagaatctatttttttctgccttagattttggttttacagtaaaa...
species | Zea mays |
transcript | GRMZM2G032314_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123230|gb|FL167317.1|FL167317
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123230|gb|FL167317.1|FL167317
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123228|gb|FL167315.1|FL167315
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123228|gb|FL167315.1|FL167315
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123228|gb|FL167315.1|FL167315
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122445|gb|FL167296.1|FL167296
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122445|gb|FL167296.1|FL167296
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122445|gb|FL167296.1|FL167296
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121673|gb|FL167292.1|FL167292
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121673|gb|FL167292.1|FL167292
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121673|gb|FL167292.1|FL167292
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121675|gb|FL167294.1|FL167294
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121675|gb|FL167294.1|FL167294
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121675|gb|FL167294.1|FL167294
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122444|gb|FL167295.1|FL167295
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: TAEST: gi|211122444|gb|FL167295.1|FL167295
genomic: --
EST: TAEST: gi|211122444|gb|FL167295.1|FL167295
genomic: --
EST: TAEST: gi|211121674|gb|FL167293.1|FL167293
genomic: --
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121674|gb|FL167293.1|FL167293
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211121674|gb|FL167293.1|FL167293
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123232|gb|FL167319.1|FL167319
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123232|gb|FL167319.1|FL167319
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123232|gb|FL167319.1|FL167319
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122448|gb|FL167299.1|FL167299
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122448|gb|FL167299.1|FL167299
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122448|gb|FL167299.1|FL167299
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123225|gb|FL167312.1|FL167312
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123225|gb|FL167312.1|FL167312
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123225|gb|FL167312.1|FL167312
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122447|gb|FL167298.1|FL167298
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG CATTTCTCATAGGCCCCAAEST: gi|211123229|gb|FL167316.1|FL167316
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacagCATTTCTCATAGGCCCCAA
EST: TAEST: gi|211123229|gb|FL167316.1|FL167316
genomic: --
EST: TAEST: gi|211123229|gb|FL167316.1|FL167316
genomic: --
EST: TAEST: gi|211122451|gb|FL167302.1|FL167302
genomic: --
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122451|gb|FL167302.1|FL167302
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211122451|gb|FL167302.1|FL167302
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123223|gb|FL167310.1|FL167310
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123223|gb|FL167310.1|FL167310
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG TEST: gi|211123223|gb|FL167310.1|FL167310
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
EST: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAG T
genomic: GTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttg ... ggcagtacag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATGCTTGTCTTCTTCAATCCAGTGAAATTTGGGGTAGCATTCACCCTTGGCAATTTGATGGCCCTTGGAAGgtctgttttgctagctgccaaagatctgttcaattcatatatcttcaccctttgttagaatctatttttttctgccttagattttggttttacagtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG