ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GAAATGGGTGACTGGTGCATTTGCTGGGCATACCTCGGTTTGCTTAAAAGACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcatagattgaatatcttggttaattaaaattaatcttgccagcatgattcatgttaccatatagctgctttcgtttgtttaattattctttgtt...

Basic information

species	Zea mays
transcript	GRMZM2G031824_T01
intron #	3
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G031824_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 3

GAAATGGGTGACTGGTGCATTTGCTGGGCATACCTCGGTTTGCTTAAAAGACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcatagattgaatatcttggttaattaaaatt-----aatcttgccagcatgattcatgttaccatatagctgctttcgtttgtttaattattctttgtt
|||||||||||||||||| ||||||||||| ||| | |||||||| ||||| |||||||||||  |||||||||| || ||||||| |||||| || |||||| |   | | |  | | || ||  |  | ||| ||      || ||| |  ||||    ||||   |    |     | ||| |  | |   ||||  ||   
GAAATGGGTGACTGGTGCGTTTGCTGGGCACACCGCAGTTTGCTTGAAAGATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgta-tagtttgctgaactgtcgtgcgtcttgaaagtttgcatgatattgtctacatgtgatatgtgtgctagcattgaatatcgatcatgtc-ctattgctt---

upper sequence: GRMZM2G031824_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 3

GAAATGGGTGACTGGTGCATTTGCTGGGCATACCTCGGTTTGCTTAAAAGACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcatagattgaatatcttggttaattaaaattaatcttgccagcatgattcatgttaccatatagctgctttcgtttgtttaattattctttgtt--
 |||||||| || |||||||||||||| |||||  | |||||||| || || ||  ||||| ||||||||||||  ||||| ||  | || ||||| ||||||    |    |    |||    |  ||  |||||| |         ||  |    | |     ||||  | |  | |  | | || |     | | |   
AAAATGGGTAACAGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagcagtaatgtattgaaga-aaagaaaattgacaacatgcacaaaagcagtatcgtt-tataatttcacttgaatttctagtacggttgtatcca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|32842172|gb|CD981853.1|CD981853

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32925672|gb|CF030484.1|CF030484

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGGAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32850032|gb|CD989713.1|CD989713

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32841464|gb|CD981145.1|CD981145

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32924871|gb|CF029683.1|CF029683

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32924893|gb|CF029705.1|CF029705

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32841167|gb|CD980848.1|CD980848

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32925223|gb|CF030035.1|CF030035

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32841238|gb|CD980919.1|CD980919

EST:     ACGAGAAGGGTGATCTTTGG-TTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32842171|gb|CD981852.1|CD981852

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32921666|gb|CF026478.1|CF026478

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32924738|gb|CF029550.1|CF029550

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|91875426|gb|EB405383.1|EB405383

EST:     ACGAGAAGGGTGATCTTTGGGGTGCAGAGTCAGGCTATGAAAACGAGAGG                         GGAGAAGAAAT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAAT

EST: gi|32841288|gb|CD980969.1|CD980969

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32925872|gb|CF030684.1|CF030684

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32924755|gb|CF029567.1|CF029567

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32840853|gb|CD980534.1|CD980534

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32840051|gb|CD979732.1|CD979732

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32925065|gb|CF029877.1|CF029877

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32922055|gb|CF026867.1|CF026867

EST:     CAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: CAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32920261|gb|CF025073.1|CF025073

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32841249|gb|CD980930.1|CD980930

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32840052|gb|CD979733.1|CD979733

EST:     ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: ACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

EST: gi|32841608|gb|CD981289.1|CD981289

EST:     CGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAG                         GGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT
genomic: CGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 321

GAAATGGGTGACTGGTGCATTTGCTGGGCATACCTCGGTTTGCTTAAAAGACGAGAAGGGTGATCTTTGGGTTGCAGAGTCAGGCTATGAAAACGAGAAGgtaattcata ... aaaataatagGGAGAAGAAATCATTGCTATAGTTCCTTGGGATGAATGGTGGGCCATGGCTCTCAAGGATGAATCAAATCCTCAGATAGCCCTGCTTCCTTTGCACCCTG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 458

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 592