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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTTTGCAGAAGCTCGGTTTTTACTCAGGCGAGGAAGACATGGAGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAGgttattaatactcctcaagattatccttcacactacattgcatctatatatgctactggatgatgatacgcgctctcttcttccag

Basic information

species Zea mays
transcript GRMZM2G031721_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031721_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os04g43420.1 (Oryza sativa), 5'ss of exon 2
GAAGCTTTGCAGAAGCTCGGTTTTTACTCAGGCGAGGAAGACATGGAGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAGgttattaat--actcctcaagattatccttcacactacattgcat--ctatatatgctactggatgatg-atacgcgctctcttc--ttccag
||||| ||| | ||||| ||||  || || ||||| ||||||||||||| |||||| ||||| ||||||||||| |||||||| |||||||||||||||| |  |  | |  |       || |  |  |     |   ||  |||  ||  | |     |  || | || || |   |||  || |||
GAAGCATTGGAAAAGCTGGGTTACTATTCGGGCGAAGAAGACATGGAGTTCTCCAGCTTCTCATCTGGCACCGAACGAGCTGTGAAGACATGGCAGgttactgcttcattatttcgttcaattcaacgtatattttcagatagctaactactccataaacttgtgtaaacacgttactttctgttgcag

upper sequence: GRMZM2G031721_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G34000.1 (Glycine max), 5'ss of exon 3
GAAGCTTTGCAGAAGCTCGGTTTTTACTCAGGCGAGGAAGACATGGAGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAGgttattaatactcctcaagat-tatccttcacactacattgcatctatatatgctactggatgatgatacgcgctctcttct-tccag-------------------------------------------------------------
||||| |||  |||  | || |||||||| |||||||||||||||||||| ||||| |||||   ||| |||||||| ||||| ||||| ||||| |||| || |  ||  ||  || |||  ||     |     |     | |  |  |  ||||| |   | |    | | |  | | ||                                                              
GAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACCGAGCGTGCTGTGAAGACTTGGCAAgttagtattgttctgcataatatatgatttttgatgtgaagagaggaaaatttgtcttggattaattttcattttatatgatgtacatgctatgcctggacatttttgtttttgtgattctgatggttgtgtgattatttgtttaaaag

upper sequence: GRMZM2G031721_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G33590.1 (Glycine max), 5'ss of exon 2
GAAGCTTTGCAGAAGCTCGGTTTTTACTCAGGCGAGGAAGACATGGAGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAGgttattaatactcctca----agattatccttcacactacattgcatctatatatgct--actggatgatgatacgcgctctcttcttccag--------------------------------------------------------------------------
||||| |||  |||  | || |||||||| |||||||||||||||||||| ||||| |||||   ||| || ||||| ||||| ||||| ||||| |||  || |  ||  ||    | || ||  || |    |          || | |  |  | |   |    ||     ||  ||| ||                                                                              
GAAGCATTGTTGAAATTGGGGTTTTACTCTGGCGAGGAAGACATGGAGTATTCCAGCTTCTCAAGTGGAACTGAGCGTGCTGTGAAGACTTGGCAAgttcgtattggtctgcataatatatgatttttgatgagaagagagggaaatttgtcttggattaattttcaatttaaactgacttttttatatgatatgtattgtgctatgcctggacatttttctttttgtgatttatatgtttgtgtgattatttgtttaaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149080034|gb|EE169054.2|EE169054
EST:     AGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAG                         GCAACGGTAGGAGCTTCAGAGAACGGGGTGATGACATCGGAGCTGCTTGAG
genomic: AGTACTCCAGTTTCTCGTCTGGCACCGAGCGAGCTGTCAAGACATGGCAGgttattaata ... cttcttccagGCAACGGTAGGAGCTTCAGAGAACGGGGTGATGACATCGGAGCTGCTTGAG